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andi

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A program for estimating the evolutionary distance between closely related genomes. These distances can be used to rapidly infer phylogenies for big sets of genomes. Because andi does not compute full alignments, it is so efficient that it scales even up to thousands of bacterial genomes.

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andi versioning

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andi classification

andi specifications

Software type:
Package/Module
Restrictions to use:
None
Programming languages:
C
Computer skills:
Advanced
Maintained:
Yes
Conda:
https://bioconda.github.io/recipes/andi/README.html
Interface:
Command line interface
Operating system:
Unix/Linux
License:
GNU General Public License version 2.0
Stability:
Stable
Debian:
https://packages.qa.debian.org/a/andi.html
Issue URL:
https://github.com/evolbioinf/andi//issues

andi support

Maintainer

  • Fabian Klötzl <>

Credits

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Publications

Institution(s)

Department of Evolutionary Genetics, Max-Planck-Institute for Evolutionary Biology, Plön, Germany; Institue for Neuro- and Bioinformatics, Lübeck University, Lübeck, Germany; Mathematical Stochastics, Mathematical Institute, Freiburg University, Germany

Link to literature

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