A program for estimating the evolutionary distance between closely related genomes. These distances can be used to rapidly infer phylogenies for big sets of genomes. Because andi does not compute full alignments, it is so efficient that it scales even up to thousands of bacterial genomes.

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andi specifications

Software type:
Package
Restrictions to use:
None
Programming languages:
C
Computer skills:
Advanced
Interface:
Command line interface
Operating system:
Unix/Linux
License:
GNU General Public License version 2.0
Stability:
Stable

Publications

  • (Haubold et al., 2015) andi: fast and accurate estimation of evolutionary distances between closely related genomes. Bioinformatics.
    PMID: 25504847

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Maintainer

Credits

Institution(s)

Department of Evolutionary Genetics, Max-Planck-Institute for Evolutionary Biology, 24306 Plön, Germany; Institue for Neuro- and Bioinformatics, Lübeck University, 23562 Lübeck, Germany; Mathematical Stochastics, Mathematical Institute, Freiburg University, Germany

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