Andromeda statistics

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Citations per year

Number of citations per year for the bioinformatics software tool Andromeda

Tool usage distribution map

This map represents all the scientific publications referring to Andromeda per scientific context
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Associated diseases

This word cloud represents Andromeda usage per disease context

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Andromeda specifications


Unique identifier OMICS_19843
Name Andromeda
Software type Application/Script
Interface Graphical user interface
Restrictions to use None
Operating system Windows
Computer skills Medium
Stability Stable
Maintained Yes


No version available


  • person_outline Matthias Mann
  • person_outline Juergen Cox

Additional information

Andromeda is available as a stand-alone, but also as a sub tool of MaxQuant.

Publication for Andromeda

Andromeda citations


Trafficking, localization and degradation of the Na+,HCO3− co transporter NBCn1 in kidney and breast epithelial cells

Sci Rep
PMCID: 5943355
PMID: 29743600
DOI: 10.1038/s41598-018-25059-7
call_split See protocol

[…] er). The raw data files were processed using MaxQuant (version 1.3.05). Data were blasted against Uniprot ( human proteome dataset (release 2013_01, 87613 sequences) using the Andromeda search engine. […]


Complete genome sequence and the expression pattern of plasmids of the model ethanologen Zymomonas mobilis ZM4 and its xylose utilizing derivatives 8b and 2032

Biotechnol Biofuels
PMCID: 5930841
PMID: 29743953
DOI: 10.1186/s13068-018-1116-x
call_split See protocol

[…] HCD with NCE of 30, analysis in the Orbitrap at R = 15,000 with max inject time of 22 ms, and AGC target set to 2 × 105.Raw files were analyzed using MaxQuant Spectra were searched using the Andromeda search engine against a target decoy database generated in house. As described previously [, ], label-free quantitation and match between runs were toggled on and the number of peptides meas […]


An effector from the Huanglongbing associated pathogen targets citrus proteases

Nat Commun
PMCID: 5928222
PMID: 29712915
DOI: 10.1038/s41467-018-04140-9

[…] ll ratio was 1%.Peptide identification, analyses, and quantification: The raw data files were imported into MaxQuant v1.5.6.5 for label-free intensity-based quantification. The database search engine Andromeda was used to search MS/MS spectra against the C. clementina and C. sinensis databases downloaded from Phytozome with a tolerance level of 20 ppm for the first search and 6 ppm for the main se […]


Nucleolar nucleoplasmic shuttling of TARG1 and its control by DNA damage induced poly ADP ribosylation and by nucleolar transcription

Sci Rep
PMCID: 5928194
PMID: 29712969
DOI: 10.1038/s41598-018-25137-w
call_split See protocol

[…] mode; 20 s dynamic exclusion; top 10 precursor fragmentation in the ion trap with a collision energy of 35%.Analysis of the raw data was performed using MaxQuant (version,) with the built-in Andromeda search engine. The spectra were searched against the human SwissProt database version 06/2015 (canonical and isoforms). The MaxQuant default settings (including mass tolerance) were used. Sp […]


Viral targeting of TFIIB impairs de novo polymerase II recruitment and affects antiviral immunity

PLoS Pathog
PMCID: 5927403
PMID: 29709033
DOI: 10.1371/journal.ppat.1006980
call_split See protocol

[…] Raw mass-spectrometry data were processed with MaxQuant software versions and version [] using the built-in Andromeda search engine to search against human and mouse proteomes (UniprotKB, release 2012_06) containing forward and reverse sequences, and the label-free quantitation algorithm as described previo […]


Quantitative Tandem Affinity Purification, an Effective Tool to Investigate Protein Complex Composition in Plant Hormone Signaling: Strigolactones in the Spotlight

Front Plant Sci
PMCID: 5932160
PMID: 29755490
DOI: 10.3389/fpls.2018.00528
call_split See protocol

[…] All raw files were processed with the MaxQuant software (version (). The derived data were searched with the built-in Andromeda search engine against the Arabidopsis thaliana forward/reversed version of the TAIR10_pep_20101214 database containing also sequences of frequently observed contaminants, including human ker […]

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Andromeda institution(s)
Department of Proteomics and Signal Transduction, Max-Planck-Institute of Biochemistry, Martinsried, Germany; Novo Nordisk Foundation Center for Protein Research, Faculty of Health Sciences, University of Copenhagen, Copenhagen, Denmark
Andromeda funding source(s)
Supported by the European Union seventh Framework Program (HEALTH-F4-2008-201648/ PROSPECTS).

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