AnGST pipeline

AnGST specifications

Information


Unique identifier OMICS_23377
Name AnGST
Alternative name ANalyzer of Gene and Species Trees
Interface Web user interface
Restrictions to use None
Input data A specie tree or gene tree.
Programming languages Python
Computer skills Basic
Stability Stable
Maintained Yes

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Documentation


Maintainers


  • person_outline Eric Alm <>
  • person_outline ANGST team <>

Publication for ANalyzer of Gene and Species Trees

AnGST citation

2016
PMCID: 5036157

[…] information of lyases and each of the lyase gene trees were visualized using the interactive tree of life38., the aly and oal gene trees were reconciled against the reference phylogeny using angst39 with the following cost parameters: loss=1.0, duplication=2.0, hgt=3.0 (ref. 40). the optimal reconciliation was the reconciliation with the lowest total event score. we also modified […]

AnGST institution(s)
Computational & Systems Biology Initiative, Massachusetts Institute of Technology, Cambridge, MA, USA; Departments of Biological Engineering & Civil and Environmental Engineering, Massachusetts Institute of Technology, Cambridge, MA, USA; The Broad Institute, Cambridge, MA, USA
AnGST funding source(s)
Supported by the US Department of Energy ENIGMA project through contract DE-AC02-05CH11231, the National Science Foundation under an Assembling the Tree of Life Award, and a National Defense Science and Engineering Graduate Fellowship.

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