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Animal behavior tracking software tools | Bioimaging

A fundamental challenge common to studies of animal movement, behavior, and ecology is the collection of high-quality datasets on spatial positions of animals as they change through space and time. Recent innovations in tracking technology have…
MWT
Desktop

MWT Multi-Worm Tracker

Represents a generator of population-level statistical data. The MWT package…

Represents a generator of population-level statistical data. The MWT package provides low-level features including the position and outline of the animal. It captures postural information in addition…

MAGAT Analyzer
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MAGAT Analyzer

Allows to deliver airborne cues in defined spatial and temporal gradients to…

Allows to deliver airborne cues in defined spatial and temporal gradients to freely behaving animals. MAGAT Analyzer can distribute gaseous stimuli in defined spatial and temporal patterns to freely…

FIMTrack
Desktop

FIMTrack FTIR-based Imaging Method Track

Represents a tracking program primarily designed for acquiring locomotion…

Represents a tracking program primarily designed for acquiring locomotion trajectories of Drosophila melanogaster larvae but it is also possible to analyze the behavior of others small model…

idTracker
Desktop

idTracker

A multitracking algorithm that extracts a characteristic fingerprint from each…

A multitracking algorithm that extracts a characteristic fingerprint from each animal in a video recording of a group. IdTracker then uses these fingerprints to identify every individual throughout…

JAABA
Desktop

JAABA Janelia Automatic Animal Behavior Annotator

Enables researchers to automatically compute interpretable, quantitative…

Enables researchers to automatically compute interpretable, quantitative statistics describing video of behaving animals. Through JAABA system, users encode their intuition about the structure of…

MiceProfiler
Desktop

MiceProfiler

Provides information concerning the position, orientation, distance and speed…

Provides information concerning the position, orientation, distance and speed of each mouse’s body part. MiceProfiler can resolve interacting mice that are in close contact. Using this low-level…

Ctrax
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Ctrax

A machine vision program for estimating the positions and orientations of many…

A machine vision program for estimating the positions and orientations of many walking flies, maintaining their individual identities over long periods of time. Ctrax was designed to allow…

M-Track
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M-Track

Allows automated detection of labelled forepaws in freely behaving in mice.…

Allows automated detection of labelled forepaws in freely behaving in mice. M-Track uses color detection and back projection algorithms to locate the position of color-labelled paws in videos of…

Parallel Worm…
Desktop

Parallel Worm Tracker

Records the centroid position of tens of worms in sequential video frames.…

Records the centroid position of tens of worms in sequential video frames. Parallel Worm Tracker can determine worm speed and derive a measure of the fraction of worms that are paralyzed by drug…

ethoscope
Desktop

ethoscope

Combines three of the most revolutionary innovations of the last decades - 3D…

Combines three of the most revolutionary innovations of the last decades - 3D printing, small single-board computers and machine learning - into a novel paradigm for behavioural researchers.…

SwarmSight
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SwarmSight

Provides a video motion analysis tool for the assessment of the temporal…

Provides a video motion analysis tool for the assessment of the temporal progression of animal group activity levels from recorded videos. SwarmSight utilizes a background subtraction machine vision…

BEEtag
Desktop

BEEtag BEhavioral Ecology tag

An image-based tracking system in Matlab for tracking uniquely identifiable…

An image-based tracking system in Matlab for tracking uniquely identifiable visual markers. The primary advantages of BEEtag are that it (i) independently identifies animals or marked points in each…

BEMOVI
Desktop

BEMOVI BEhavior and MOrphology from VIdeos

A digital video processing and analysis workflow to extract abundance,…

A digital video processing and analysis workflow to extract abundance, behavior and morphology of individual organisms from video sequences. BEMOVI identifies individuals present in a video,…

LaanEtAl2017
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LaanEtAl2017

Measures and classifies the behavior of individual unmarked animals on a…

Measures and classifies the behavior of individual unmarked animals on a sub-second timescale. LaanEtAl2017 is a machine vision pipeline for the study of aggression in zebrafish which allows both…

invappParagon
Desktop

invappParagon

Quantifies nematode motility/growth. invappParagon assists in identification of…

Quantifies nematode motility/growth. invappParagon assists in identification of class of anthelmintics such as dihydrobenzoxazepinone. It allows user to investigate parasitic diseases, to determine…

rethomics
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rethomics

Analyses and visualizes high-throughput animal behavioural data. Rethomics is…

Analyses and visualizes high-throughput animal behavioural data. Rethomics is an R package designed to focuses on analysing data from the Ethoscope platform as well as TriKinetics' Drosophila…

AnimalTracker
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AnimalTracker

Allows users to analyse support animal behavioral analyses. AnimalTracker is…

Allows users to analyse support animal behavioral analyses. AnimalTracker is composed of three independent modules: (i) the Tracker module permits to localize studied objects, (ii) the Zone Designer…

pySolo
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pySolo

A complete suite for analysis of sleep and locomotor activity in Drosophila…

A complete suite for analysis of sleep and locomotor activity in Drosophila melanogaster. pySolo has been developed with the specific aim of being accessible, portable, fast and easily expandable…

Phobos
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Phobos

Records rodents’ behavior during the elevated plus-maze and the open-field…

Records rodents’ behavior during the elevated plus-maze and the open-field test. Phobos is able to generate all basic locomotor-related behavioral results at once, immediately after a simple manual…

UMATracker
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UMATracker

An open-source quantitative analysis toolkit for animal experiments. UMATracker…

An open-source quantitative analysis toolkit for animal experiments. UMATracker provides a video preprocessing by the visual programming and estimates positions and/or orientations of each animals.…

GroupTracker
Desktop

GroupTracker

A multiple animal tracking system that tracks individuals under severe…

A multiple animal tracking system that tracks individuals under severe occlusion. GroupTracker (GROUP: Gaussian Reinterpretation of OcclUsion Problem) will contribute to reveal unexplored structures…

SwimR
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SwimR

SwimR is an R-based suite that calculates, analyses, and plots the frequency of…

SwimR is an R-based suite that calculates, analyses, and plots the frequency of C. elegans swimming behavior over time. It places a particular emphasis on identifying paralysis and quantifying the…

Motmot
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Motmot

An open-source toolkit for acquiring, displaying, saving, and analyzing digital…

An open-source toolkit for acquiring, displaying, saving, and analyzing digital video in real-time. At the highest level, Motmot is written in the Python computer language. The large amounts of data…

ZebraZoom
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ZebraZoom

Tracks larvae and identifies maneuvers for many animals performing discrete…

Tracks larvae and identifies maneuvers for many animals performing discrete movements. ZebraZoom detects each episodic movement and extracts large-scale statistics on motor patterns to produce a…

Tracker
Desktop

Tracker

Records the exact location of a fly in real time. Tracker is a video-based…

Records the exact location of a fly in real time. Tracker is a video-based tracking system that allows the detection of very small movements at any location within the tube. In addition to circadian…

EthoVision
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EthoVision

Tracks and analyzes the behavior, movement, and activity of any animal.…

Tracks and analyzes the behavior, movement, and activity of any animal. EthoVision is a versatile image processing system designed to automate behavioural observation and movement tracking on…

K-Track
Desktop

K-Track

Tracks animal behavior for ethological studies. K-Track adoptes predicting…

Tracks animal behavior for ethological studies. K-Track adoptes predicting linear movement or regional matching as a method to identify individuals when they overlapped. K-Track implements three main…

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