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Animal genome databases | Annotation

Genome annotation information is available from many sources including publications on the sequencing and annotation of genes for whole genomes, individual chromosomes, and whole-genome annotation computed by multiple bioinformatics groups. Ensembl…
FlyBase
Dataset

FlyBase

It is the leading website and database of Drosophila genes and genomes. FlyBase…

It is the leading website and database of Drosophila genes and genomes. FlyBase curates a variety of data from published biological literature, including phenotype, gene expression, interactions…

GenBank
Dataset

GenBank

A comprehensive database that contains publicly available nucleotide sequences…

A comprehensive database that contains publicly available nucleotide sequences for over 300 000 formally described species. These sequences are obtained primarily through submissions from individual…

NCBI
Dataset

NCBI National Center for Biotechnology Information

Supplies several online resources for biological information. NCBI is a…

Supplies several online resources for biological information. NCBI is a web-based platform gathering information, tools, and functions that can be useful for researchers about biology. It offers user…

Ensembl
Dataset

Ensembl

A genomic interpretation system providing the most up-to-date annotations,…

A genomic interpretation system providing the most up-to-date annotations, querying tools and access methods for chordates and key model organisms. The REST server, which allows programs written in…

modENCODE
Dataset

modENCODE

Provides the biological research community with a comprehensive encyclopedia of…

Provides the biological research community with a comprehensive encyclopedia of genomic functional elements in the model organisms C. elegans and D. melanogaster. modENCODE is run as a Research…

RefSeq
Dataset

RefSeq Reference Sequence

Maintains and curates a publicly available database of annotated genomic,…

Maintains and curates a publicly available database of annotated genomic, transcript, and protein sequence records. The RefSeq project leverages the data submitted to the International Nucleotide…

Gene
Dataset

Gene

Integrates gene-specific information from multiple data sources. NCBI Reference…

Integrates gene-specific information from multiple data sources. NCBI Reference Sequence (RefSeq) genomes for viruses, prokaryotes and eukaryotes are the primary foundation for Gene records in that…

Branchiostoma…
Dataset

Branchiostoma floridae

Offers gene annotation of Branchiostoma floridae, a lancelet of the genus…

Offers gene annotation of Branchiostoma floridae, a lancelet of the genus Branchiostoma. The genome of this species reveals that among the chordates, the morphologically simpler tunicates are…

VectorBase
Dataset

VectorBase

A National Institute of Allergy and Infectious Diseases supported…

A National Institute of Allergy and Infectious Diseases supported Bioinformatics Resource Center (BRC) for invertebrate vectors of human pathogens. VectorBase currently hosts the genomes of 35…

Pleurobrachia…
Dataset

Pleurobrachia bachei

Offers assembly and gene annotation of Pleurobrachia bachei, which is in the…

Offers assembly and gene annotation of Pleurobrachia bachei, which is in the Pleurobrachiidae family. The database sequences the Pleurobrachia bachei genome and identifies ~19,600 gene models, 96% of…

Nematostella…
Dataset

Nematostella vectensis

Offers gene annotation of Nematostella vectensis also known as starlet sea…

Offers gene annotation of Nematostella vectensis also known as starlet sea anemone. This genome includes approximately 7.8X whole genome sequencing (WGS) in small insert end-sequence coverage. After…

Avianbase
Dataset

Avianbase

A resource for bird genomics, which provides access to data released by the…

A resource for bird genomics, which provides access to data released by the Avian Phylogenomics Consortium. This bird portal can be tailored to the needs of the individual bird research communities.…

CCDS
Dataset

CCDS Consensus Coding Sequence

A collaborative effort to maintain a dataset of protein-coding regions that are…

A collaborative effort to maintain a dataset of protein-coding regions that are identically annotated on the human and mouse reference genome assemblies by the National Center for Biotechnology…

HGD
Dataset

HGD Hymenoptera Genome Database

A model organism database for insect species of the order Hymenoptera (ants,…

A model organism database for insect species of the order Hymenoptera (ants, bees and wasps). HGD maintains genomic data for 9 bee species, 10 ant species and 1 wasp, including the versions of genome…

Gasterosteus…
Dataset

Gasterosteus aculeatus

Offers gene annotation of Gasterosteus aculeatus also known as three-spined…

Offers gene annotation of Gasterosteus aculeatus also known as three-spined stickleback. The assembly has been sequenced by whole-genome shotgun sequencing with a base coverage of approximately 11x.…

Latimeria…
Dataset

Latimeria chalumnae

Offers gene annotation of Latimeria chalumnae also known as West Indian Ocean…

Offers gene annotation of Latimeria chalumnae also known as West Indian Ocean coelacanth. Models built from Coelacanth proteins and cDNAs have been given priority over predictions from other…

Oryzias latipes
Dataset

Oryzias latipes

Offers gene annotation of Oryzias latipes also known as the medaka. Oryzias…

Offers gene annotation of Oryzias latipes also known as the medaka. Oryzias latipes is a model organism and is extensively used in many areas of biological research, most notably in toxicology. This…

Sus scrofa
Dataset

Sus scrofa

Offers gene annotation of Sus scrofa also known as pig. The haploid genome of…

Offers gene annotation of Sus scrofa also known as pig. The haploid genome of the domesticated pig is estimated to be 2800 Mb. The diploid genome is organized in 18 pairs of autosomes and two sex…

Ailuropoda…
Dataset

Ailuropoda melanoleuca

Offers gene annotation of Ailuropoda melanoleuca also known as giant panda. The…

Offers gene annotation of Ailuropoda melanoleuca also known as giant panda. The giant panda genome was sequenced using Illumina dye sequencing. Its genome contains 20 pairs of autosomes and one…

Canis lupus…
Dataset

Canis lupus familiaris

Offers gene annotation of Canis lupus familiaris also known as domestic dog. It…

Offers gene annotation of Canis lupus familiaris also known as domestic dog. It consists of 39 chromosomes (1-38 and X) and 15 unplaced scaffolds. Approximately 31.5 million sequence reads were…

Pan paniscus
Dataset

Pan paniscus

Offers gene annotation of Pan paniscus also known as bonobo. The bonobo genome…

Offers gene annotation of Pan paniscus also known as bonobo. The bonobo genome shows that more than 3% of the human genome is more closely related to either bonobos or chimpanzees than these are to…

Pan troglodytes
Dataset

Pan troglodytes

Offers gene annotation of Pan troglodytes also known as common chimpanzee. The…

Offers gene annotation of Pan troglodytes also known as common chimpanzee. The chimpanzee is an important model to study biology, disease, and evolution. Research with Pan troglodytes has provided…

Gorilla gorilla
Dataset

Gorilla gorilla

Offers gene annotation of Gorilla gorilla also known as Western lowland…

Offers gene annotation of Gorilla gorilla also known as Western lowland gorilla. Sequencing was undertaken using two separate methods: traditional capillary whole-genome shotgun (WGS) sequencing and…

Hydra…
Dataset

Hydra magnipapillata

Offers assembly and gene annotation of Hydra magnipapillata, which is in the…

Offers assembly and gene annotation of Hydra magnipapillata, which is in the family Hydridae. The Hydra genome has been shaped by bursts of transposable element expansion, horizontal gene transfer,…

Trichoplax…
Dataset

Trichoplax adhaerens

A database which offers assembly and gene annotation of Trichoplax adhaerens,…

A database which offers assembly and gene annotation of Trichoplax adhaerens, which is in the Metazoa family. The database reports the sequencing and analysis of the 98 million base pair nuclear…

Amphimedon…
Dataset

Amphimedon queenslandica

Offers assembly and gene annotation of Amphimedon queenslandica, which is in…

Offers assembly and gene annotation of Amphimedon queenslandica, which is in the Niphatidae family. Amphimedon queenslandica is remarkably similar to other animal genomes in content, structure and…

Ascaris suum
Dataset

Ascaris suum

Offers assembly and gene annotation of Ascaris suum also known as large…

Offers assembly and gene annotation of Ascaris suum also known as large roundworm of pigs, which is in the Ascarididae family. The database reports the 273 megabase draft genome of Ascaris suum and…

Anolis…
Dataset

Anolis carolinensis

A database which offers gene annotation of Anolis carolinensis also known as…

A database which offers gene annotation of Anolis carolinensis also known as Carolina anole an arboreal lizard. The anole lizard genome is composed of 13 chromosomes, assembled from 41.9861 contigs…

Tetraodon…
Dataset

Tetraodon nigroviridis

A database which offers gene annotation of Tetraodon nigroviridis also known as…

A database which offers gene annotation of Tetraodon nigroviridis also known as green spotted puffer. The Tetraodon genome was sequenced using the whole-genome shotgun (WGS) approach. The Tetraodon…

Haliaeetus…
Dataset

Haliaeetus albicilla

Offers gene annotation of Haliaeetus albicilla also known as the white-tailed…

Offers gene annotation of Haliaeetus albicilla also known as the white-tailed eagle. DNA was collected from a vouchered sample (137926) of Natural History Museum of Denmark from a male caught in…

RhesusBase
Dataset

RhesusBase

Gathers informations about genome-wide macaque gene. RhesusBase includes more…

Gathers informations about genome-wide macaque gene. RhesusBase includes more than 170 million annotation records from about 1,760 next-generation sequencing (NGS) data sets. Searches can be made by…

Ciona…
Dataset

Ciona intestinalis

Offers gene annotation of Ciona intestinalis also known as vase tunicate. This…

Offers gene annotation of Ciona intestinalis also known as vase tunicate. This genome is the smallest of any experimentally accessible chordate, and thus provides a good system for exploring…

Equus ferus…
Dataset

Equus ferus caballus

Offers gene annotation of Equus ferus caballus also known as horse. It is a…

Offers gene annotation of Equus ferus caballus also known as horse. It is a model organism for research on biomechanics and exercise physiology. The genome sequence will facilitate the identification…

Homo…
Dataset

Homo neanderthalensis

Offers gene annotation of Homo neanderthalensis. According to preliminary…

Offers gene annotation of Homo neanderthalensis. According to preliminary sequences, 99.7% of the base pairs of the modern human and Neanderthal genomes are identical, compared to humans sharing…

Macaca mulatta
Dataset

Macaca mulatta

A database which offers gene annotation of Macaca mulatta also known as rhesus…

A database which offers gene annotation of Macaca mulatta also known as rhesus macaque. Because they are genetically and physiologically similar to humans, rhesus monkeys are the most widely used…

Mnemiopsis…
Dataset

Mnemiopsis leidyi

Offers assembly and gene annotation of Mnemiopsis leidyi, which is in the…

Offers assembly and gene annotation of Mnemiopsis leidyi, which is in the Bolinopsidae family. The Mnemiopsis Genome Project Portal is intended as a resource for investigators from a number of…

Francisella…
Dataset

Francisella tularensis

Presents the whole sequenced genome of Francisella tularensis. F. tularensis…

Presents the whole sequenced genome of Francisella tularensis. F. tularensis subsp. tularensis strain SCHU S4 was first isolated from a tularemia patient in the US in 1995. Because of its high…

Xiphophorus…
Dataset

Xiphophorus maculatus

Offers gene annotation of Xiphophorus maculatus also known as southern…

Offers gene annotation of Xiphophorus maculatus also known as southern platyfish. The genus Xiphophorus is composed of 27 described species of both platyfish and swordtails. The genome assembly…

Petromyzon…
Dataset

Petromyzon marinus

Offers gene annotation of Petromyzon marinus also known as the sea lamprey. The…

Offers gene annotation of Petromyzon marinus also known as the sea lamprey. The lamprey genome may serve as a model for developmental biology as well as evolution studies involving transposition of…

Anas…
Dataset

Anas platyrhynchos

Offers gene annotation of Anas platyrhynchos also known as the wild duck. The…

Offers gene annotation of Anas platyrhynchos also known as the wild duck. The assembly comprises 78487 top level sequences, all of which are unplaced scaffolds (from 227448 contigs). The N50 of the…

Vega
Dataset

Vega Vertebrate Genome Annotation

Provides annotation manually curated of human, mouse and zebrafish genomic…

Provides annotation manually curated of human, mouse and zebrafish genomic sequences. Vega was created by merging two in-house databases at the Sanger Institute: the pipeline database containing the…

MGD
Dataset

MGD Mouse Genome Database

Serves the international biomedical research community as the central resource…

Serves the international biomedical research community as the central resource for integrated genomic, genetic and biological data on the laboratory mouse. To facilitate use of mouse as a model in…

RGD
Dataset

RGD Rat Genome Database

Provides a comprehensive data repository and informatics platform related to…

Provides a comprehensive data repository and informatics platform related to the laboratory rat, one of the most important model organisms for disease studies. Rat Genome Database (RGD) maintains and…

FlyMine
Dataset

FlyMine

A data warehouse that addresses one of the important challenges of modern…

A data warehouse that addresses one of the important challenges of modern biology: how to integrate and make use of the diversity and volume of current biological data. Its main focus is genomic and…

Ensembl Genomes
Dataset

Ensembl Genomes

An integrating resource for genome-scale data from non-vertebrate species.

An integrating resource for genome-scale data from non-vertebrate species.

Anopheles…
Dataset

Anopheles gambiae

A database offering the genome sequence of Anopheles gambiae, the primary…

A database offering the genome sequence of Anopheles gambiae, the primary mosquito vector responsible for the transmission of malaria in most of sub-Saharan Africa. It is a member of a species…

Metascape
Web

Metascape

A web portal for gene annotation and analysis resource that helps biologists…

A web portal for gene annotation and analysis resource that helps biologists make sense of one or multiple gene lists. Metascape provides automated meta-analysis tool to understand common and unique…

SmedGD
Dataset

SmedGD Schmidtea mediterranea Genome Database

Integrates in a single web-accessible portal all available data associated with…

Integrates in a single web-accessible portal all available data associated with the planarian genome, including predicted and annotated genes, ESTs, protein homologies, gene expression patterns and…

Xenbase
Dataset

Xenbase

Integrates variety of data from biomedical model genus and archives large data…

Integrates variety of data from biomedical model genus and archives large data sets that would otherwise be unavailable to the global scientific community. Researchers can easily navigate from genome…

SilkDB
Dataset

SilkDB

Provides access to genome biology of the silkworm (Bombyx mori). SilkDB is an…

Provides access to genome biology of the silkworm (Bombyx mori). SilkDB is an open access database that contains assembly of silkworm genome sequence. It provides a variety of user-friendly…

Echinobase
Dataset

Echinobase

Provides information on genomic from sea urchins and related echinoderms.…

Provides information on genomic from sea urchins and related echinoderms. Echinobase is a searchable annotation database that permits the access of reference species like Strongylocentrotus…

BeetleBase
Dataset

BeetleBase

A comprehensive sequence database and important community resource for…

A comprehensive sequence database and important community resource for Tribolium genetics, genomics and developmental biology.

IGTC
Dataset

IGTC International Gene Trap Consortium

Centralizes access to all publicly available gene trap cell line data in mouse.…

Centralizes access to all publicly available gene trap cell line data in mouse. IGTC is a repository that provides researchers with the data and informatics tools necessary to find gene trap cell…

ANISEED
Dataset

ANISEED

A sophisticated information system dedicated to the biology of ascidians, and…

A sophisticated information system dedicated to the biology of ascidians, and which consists of two classes of inter-linked databases. The Developmental Browser formalizes, integrates and displays an…

NMPDR
Dataset

NMPDR National Microbial Pathogen Data Resource

Compiles information about NIAID Category B priority pathogens, including the…

Compiles information about NIAID Category B priority pathogens, including the food and water-borne diarrheagenic bacteria. NMPDR collects multiple data about pathogenic microorganisms and includes a…

MGC
Dataset

MGC Mammalian Gene Collection

Provides publicly accessible resources to the full research community. The MGC…

Provides publicly accessible resources to the full research community. The MGC project entails the production of libraries, sequencing, and database and repository development, as well as the support…

ZFIN
Dataset

ZFIN The Zebrafish Model Organism Database

The central resource for zebrafish genetic, genomic, phenotypic and…

The central resource for zebrafish genetic, genomic, phenotypic and developmental data.

BIG Data Center
Dataset

BIG Data Center

A data repository for constructing and maintaining biological databases to aid…

A data repository for constructing and maintaining biological databases to aid translation of big data into big discover. The BIG Data Center takes full advantages of valuable resources and…

Nematode.net
Dataset

Nematode.net

Disseminates diverse bioinformatic data sets and provide analysis tools to the…

Disseminates diverse bioinformatic data sets and provide analysis tools to the broad scientific community in a useful and user-friendly manner. Next-generation data has been added to the various…

AgBase
Dataset

AgBase

Provides resources to facilitate modeling of functional genomics data and…

Provides resources to facilitate modeling of functional genomics data and structural and functional annotation of agriculturally important animal, plant, microbe and parasite genomes.

WorfDB
Dataset

WorfDB Worm ORFeome DataBase

Serves as a central data repository enabling the scientific community to search…

Serves as a central data repository enabling the scientific community to search for availability and quality of cloned ORFs.

Interactive Fly
Dataset

Interactive Fly

Provides information about Drosophila development and metazoan evolution.…

Provides information about Drosophila development and metazoan evolution. Interactive Fly is a web resource that documents developmentally relevant genes, their function, expression and interactions,…

DroSpeGe
Dataset

DroSpeGe Drosophila Species Genomes

Provides genome researchers with rapid, usable access to 12 new and old…

Provides genome researchers with rapid, usable access to 12 new and old Drosophila genomes, since its inception in 2004.

PEDANT
Dataset

PEDANT

Provides exhaustive automatic analysis of genomic sequences by a large variety…

Provides exhaustive automatic analysis of genomic sequences by a large variety of bioinformatics tools. PEDANT is a database that includes (i) integration with the BioRSTM data retrieval system which…

BGD
Dataset

BGD Bovine Genome Database

Strives to improve annotation of the bovine genome and to integrate the genome…

Strives to improve annotation of the bovine genome and to integrate the genome sequence with other genomics data. We have developed new genome and annotation browsers using JBrowse and WebApollo for…

SilkSatDb
Dataset

SilkSatDb

An interactive online relational database that catalogs information about the…

An interactive online relational database that catalogs information about the microsatellite repeats of the silkworm, Bombyx mori.

InsectBase
Dataset

InsectBase

Provides a comprehensive platform for researchers who have interests in…

Provides a comprehensive platform for researchers who have interests in analyzing insect genes. InsectBase contains more than 12 millions of sequences, encompassing the genomes of 138 insects,…

MBGD
Dataset

MBGD Microbial genome database for comparative analysis

A comprehensive ortholog database for flexible comparative analysis of…

A comprehensive ortholog database for flexible comparative analysis of microbial genomes, where the users are allowed to create an ortholog table among any specified set of organisms. The MyMBGD…

WormBase…
Dataset

WormBase ParaSite

Provides parasitic worm genomes. WormBase ParaSite aims to serve…

Provides parasitic worm genomes. WormBase ParaSite aims to serve parasitologists working on helminths who use genomics as an investigative tool. It allows users to view their own data in the context…

OikoBase
Dataset

OikoBase

Provides information on expressed sequence tags (ESTs), transcripts, proteins…

Provides information on expressed sequence tags (ESTs), transcripts, proteins and genome-wide expression profiles for the urochordate Oikopleura dioica. OikoBase is a tiling array-based developmental…

FAASG
Web

FAASG Functional Annotation of All Salmonid Genomes

Permits to annotate genome function of Atlantic salmon, considering species and…

Permits to annotate genome function of Atlantic salmon, considering species and populations of major scientific interest. FAASG exploits unique features of salmonid biology, including recent whole…

Trematode.net
Dataset

Trematode.net

A site dedicated to the dissemination of data from flukes, flatworm parasites…

A site dedicated to the dissemination of data from flukes, flatworm parasites of the class Trematoda, phylum Platyhelminthes. Trematode.net is an independent component of Helminth.net and currently…

Helminth.net
Dataset

Helminth.net

A collection of worm-related databases and analysis tools. Currently the sites…

A collection of worm-related databases and analysis tools. Currently the sites Nematode.net and Trematode.net fall under the Helminth.net umbrella. The databases' interface, with a sophisticated…

i5k…
Dataset

i5k Workspace@NAL

The 5000 arthropod genomes initiative (i5k) has tasked itself with coordinating…

The 5000 arthropod genomes initiative (i5k) has tasked itself with coordinating the sequencing of 5000 insect or related arthropod genomes. The resulting influx of data, mostly from small research…

ARKdb
Dataset

ARKdb

Provides genome mapping data from farmed species and other animals. ARKdb…

Provides genome mapping data from farmed species and other animals. ARKdb contains information details of loci, maps, experimental methods and the source references of twelve species: cat, chicken,…

wFleaBase
Dataset

wFleaBase

This web service provides gene and genomic information for species of the genus…

This web service provides gene and genomic information for species of the genus Daphnia - commonly known as the water flea.

BGD
Dataset

BGD Bat Genome Database

An open-access, web-available portal that integrates available data of bat…

An open-access, web-available portal that integrates available data of bat genomes and genes. BGD hosts data from six bat species, including two megabats and four microbats. Users can query the gene…

AphidBase
Dataset

AphidBase

A centralized bioinformatic resource that was developed to facilitate community…

A centralized bioinformatic resource that was developed to facilitate community annotation of the pea aphid genome by the International Aphid Genomics Consortium (IAGC).

The Naked Mole…
Dataset

The Naked Mole Rat Genome Resource

Contains the assembled and annotated genome of the naked mole-rat. The Naked…

Contains the assembled and annotated genome of the naked mole-rat. The Naked Mole Rat Genome Resource is a freely available web portal featuring the data and results of analysis, to assist…

SPODOBASE
Dataset

SPODOBASE

An integrated database for the genomics of the Lepidoptera Spodoptera…

An integrated database for the genomics of the Lepidoptera Spodoptera frugiperda.

PigGIS
Dataset

PigGIS Pig Genomic Informatics System

Furnishes pig gene annotations in all sequenced genomic regions. PigGIS gathers…

Furnishes pig gene annotations in all sequenced genomic regions. PigGIS gathers 3.84 million whole genome shotgun (WGS) records generated by the Sino–Danish Pig Genome Project, 870 084 expressed…

Pristionchus.or…
Dataset

Pristionchus.org

Offers diverse content covering genome browsing, genetic and physical maps,…

Offers diverse content covering genome browsing, genetic and physical maps, similarity searches, a community platform and assembly details. Content will be continuously improved and will be an…

DeOri
Dataset

DeOri Database of Eukaryotic DNA Replication Origins

Provides a comprehensive understanding of the nature of eukaryotic replication…

Provides a comprehensive understanding of the nature of eukaryotic replication origins. DeOri is a database that contains the eukaryotic DNA replication origins identified by genome-wide analyses.…

DBM-DB
Dataset

DBM-DB Diamondback moth Genome Database

A central online repository for storing and integrating genomic data of…

A central online repository for storing and integrating genomic data of diamondback moth (DBM), Plutella xylostella (L.).

959 Nematode…
Dataset

959 Nematode Genomes

Tracks sequencing projects that have been proposed, in progress, or completed.…

Tracks sequencing projects that have been proposed, in progress, or completed. 959 Nematode Genomes is a community-curated semantic wiki coordinate the sequencing efforts of individual labs to…

CMGSDB
Dataset

CMGSDB Database for Computational Modeling of Gene Silencing

An integration of heterogeneous data sources about Caenorhabditis elegans with…

An integration of heterogeneous data sources about Caenorhabditis elegans with capabilities for compositional data mining (CDM) across diverse domains.

GENCODE
Dataset

GENCODE

Aims to identify all gene features in the human genome using a combination of…

Aims to identify all gene features in the human genome using a combination of computational analysis, manual annotation, and experimental validation. Since the first public release of this annotation…

SpongeEMP
Dataset

SpongeEMP Sponge Earth Microbiome Project

Provides sea sponge microbiome samples. SpongeEMP is a database that covers…

Provides sea sponge microbiome samples. SpongeEMP is a database that covers over 4000 samples with about 1,167,226,701 raw sequence reads. The web server allows users to retrieve statistics and…

Citrus…
Dataset

Citrus Greening Solutions

Provides gene set of the D. citri which includes 530 manually curated genes and…

Provides gene set of the D. citri which includes 530 manually curated genes and about 20,000 genes. Citrus Greening Solutions offers solution that uses a therapeutic delivery strategy and citrus…

SalmoBase
Dataset

SalmoBase

Provides an informational resource about Salmonid species. SalmoBase contains…

Provides an informational resource about Salmonid species. SalmoBase contains atlantic salmon genome reference, annotation and gene expression data. It offers a genome browser that allows users to…

CHOmine
Dataset

CHOmine

Provides a comprehensive overview and thus a valuable resource for finding…

Provides a comprehensive overview and thus a valuable resource for finding relevant data. CHOmine is an InterMine based data warehouse for Chinese Hamster Ovary (CHO) data that connects gene…

KEGG GENES
Dataset

KEGG GENES

Provides a collection of completely sequenced genomes. KEGG GENES contains gene…

Provides a collection of completely sequenced genomes. KEGG GENES contains gene catalogs mainly generated from NCBI RefSeq and GenBank. The database is enriched with a set of metagenome data and…

A A A
OmicsDI
Dataset

OmicsDI Omics Discovery Index

Permits to access, discover and disseminate omics data sets. OmicsDI is an…

Permits to access, discover and disseminate omics data sets. OmicsDI is an open-source platform that can integrate proteomics, genomics, metabolomics and transcriptomics data sets. This platform…

Oar
Dataset

Oar Ovis aries reference

Represents a gene expression atlas dataset. The O. aries reference genome (Oar…

Represents a gene expression atlas dataset. The O. aries reference genome (Oar v3.1) includes 27,504 loci that are transcribed (20,921 protein coding), of which 25,350 (19,921 protein coding) (97%)…

AODN
Dataset

AODN Open Access to Ocean Data

An interoperable online network of marine and climate data resources. The…

An interoperable online network of marine and climate data resources. The Australian Ocean Data Network is a single access point for marine data published by AODN contributors. The Portal…

Fish Karyome
Dataset

Fish Karyome

A database driven information system for fishes and other aquatic organisms.…

A database driven information system for fishes and other aquatic organisms. The system presently provides the ability to view the cytogenetic information of 726 fish species belonging to 146…

Felis…
Dataset

Felis silvestris catus

Offers gene annotation of Felis silvestris catus also known as domestic cat.…

Offers gene annotation of Felis silvestris catus also known as domestic cat. Felis catus provides several valuable models for infectious disease, including a model for human AIDS. With a large number…

Ciona savignyi
Dataset

Ciona savignyi

Offers gene annotation of Ciona savignyi also known as Pacific transparent sea…

Offers gene annotation of Ciona savignyi also known as Pacific transparent sea squirt. The assembly consists of 374 Reftigs, totalling 174 Megabases, with a Contig N50 of 141Kb and Reftig N50 size of…

Macropus…
Dataset

Macropus eugenii

Offers gene annotation of Macropus eugenii also known as tammar wallaby. The…

Offers gene annotation of Macropus eugenii also known as tammar wallaby. The N50 size is the length such that 50% of the assembled genome lies in blocks of the N50 size or longer. For the contigs in…

croc genomes
Dataset

croc genomes the crocodilian genomes project

A database which offers gene annotation of crocodilian. This base offers…

A database which offers gene annotation of crocodilian. This base offers completed genome assemblies for three important crocodilians: Alligator mississippiensis (the American alligator), Crocodylus…

Kudoa…
Dataset

Kudoa septempunctata MLST Databases

A genotype database of Kudoa septempunctata. We have developed an intraspecific…

A genotype database of Kudoa septempunctata. We have developed an intraspecific genotyping method, using the sequence variation of mitochondrial genes. We collected olive flounder samples from…

JEnsembl
Desktop

JEnsembl

Provides basic data retrieval and manipulation functionality from the Core,…

Provides basic data retrieval and manipulation functionality from the Core, Compara and Variation databases for all species in Ensembl and EnsemblGenomes. JEnsembl is a platform for the development…

NasoniaBase
Dataset

NasoniaBase

An informatics data repository for the Nasonia Species Complex Genome Projects.…

An informatics data repository for the Nasonia Species Complex Genome Projects. NasoniaBase provides a graphical interface to the assembly of the Nasonia vitripennis genome.

BeeBase
Dataset

BeeBase

A comprehensive sequence data source for the bee research community. BeeBase…

A comprehensive sequence data source for the bee research community. BeeBase hosts the genomes of Apis mellifera and three of its pathogens, as well as Bombus terrestris and B. impatiens.

MonarchBase
Dataset

MonarchBase

An integrated database for the eastern North American monarch butterfly (Danaus…

An integrated database for the eastern North American monarch butterfly (Danaus plexippus). MonarchBase provides access to a wide-range of genomic, proteomic, and related biological information.…

euGenes
Dataset

euGenes

A genome information system and database that provides a common summary of…

A genome information system and database that provides a common summary of eukaryote genes and genomes.

EVOG
Dataset

EVOG Evolution Visualizer for Overlapping Genes

An integrated database for overlapping genes that includes bioinformatics…

An integrated database for overlapping genes that includes bioinformatics analysis data. EvOG supports all overlapping genes that are common in a subset of Human, Chimpanzee, Orangutan, Marmoset,…

Gallus GBrowse
Dataset

Gallus GBrowse

Provides online access to genomic and other information about the chicken,…

Provides online access to genomic and other information about the chicken, Gallus gallus.

cBARBEL
Dataset
reefgenomics
Dataset

reefgenomics

Aims to centralize genomic and transcriptomic data from marine organisms.…

Aims to centralize genomic and transcriptomic data from marine organisms. Besides providing convenient means to download sequences, reefgenomics provides a genome browser to explore available genomic…

Lepbase
Dataset

Lepbase

A genomic resource for the Lepidoptera, supporting a research community using…

A genomic resource for the Lepidoptera, supporting a research community using genomic approaches to understand evolution, speciation, olfaction, behaviour and pesticide resistance in a wide range of…

ArthropodaCyc
Dataset

ArthropodaCyc

A collection of databases dedicated to the arthropod metabolism reconstruction.…

A collection of databases dedicated to the arthropod metabolism reconstruction. ArthropodaCyc allows researchers to perform reliable metabolism comparisons of fully sequenced arthropods genomes.…

ThebaBD
Dataset

ThebaBD Theba Pisana Gene Database

An online database committed to establishing a comprehensive gene resource for…

An online database committed to establishing a comprehensive gene resource for the land snail Theba pisana. ThebaBD includes sequence data, gene expression profiles, protein domain and biological…

CRRD
Dataset

CRRD Chinchilla Research Resource Database

Provides investigators with easy access to relevant datasets and software tools…

Provides investigators with easy access to relevant datasets and software tools to enhance their research. The Chinchilla Research Resource Database contains a complete catalog of genes for…

Meleagris…
Dataset

Meleagris gallopavo

Offers gene annotation of Meleagris gallopavo also known as Domestic Turkey.…

Offers gene annotation of Meleagris gallopavo also known as Domestic Turkey. Turkey_2.01 is an assembly of the domesticated turkey genome. The first sequences have been generated with the GS-Titanium…

Callorhinchus…
Dataset

Callorhinchus milii

Offers gene annotation of Callorhinchus milii also known as Australian ghost…

Offers gene annotation of Callorhinchus milii also known as Australian ghost shark. Callorhinchus milii was proposed as a model cartilaginous fish genome because of its relatively small genome size.…

BGDB
Dataset

BGDB

Provides several types of information about genomic data, sequences, or gene…

Provides several types of information about genomic data, sequences, or gene ontology (GO). BGDB is a literature-based resource of bivalent genes that assists users to better understand the mechanism…

PartiGeneDB
Dataset

PartiGeneDB

Provides a comprehensive resource facilitating comparative analyses.…

Provides a comprehensive resource facilitating comparative analyses. PartiGeneDB is a publicly available database resource allows researchers to access the partial genomes of organisms that may not…

OKdb
Dataset

OKdb Ovarian Kaleidoscope Database

Provides information regarding the biological function, expression pattern and…

Provides information regarding the biological function, expression pattern and regulation of genes expressed in the ovary. OKdb also contains information on gene sequences, chromosomal localization,…

ShrimpGPAT
Dataset

ShrimpGPAT

A free and easily accessed service for the shrimp research community that…

A free and easily accessed service for the shrimp research community that provides a comprehensive and up-to-date database of quality-filtered decapod gene and protein sequences together with…

Takifugu…
Dataset

Takifugu rubripes

A database which offers assembly and gene annotation of Takifugu rubripes, the…

A database which offers assembly and gene annotation of Takifugu rubripes, the Japanese pufferfish. It has the smallest genome among vertebrates. At 400 Mb, it is approximately one-eighth the size of…

GPA
Dataset

GPA Gene Perturbation Atlas

A database that includes a comprehensive collection of transcriptome profiles…

A database that includes a comprehensive collection of transcriptome profiles of protein coding genes, miRNAs and lncRNAs perturbed by knockdown or overexpression in human and mouse. GPA offers a…

WaspAtlas
Dataset

WaspAtlas

A gene database in which we have compiled annotation data from all available N.…

A gene database in which we have compiled annotation data from all available N. vitripennis releases along with a wealth of transcriptomic data, methylation data and original analyses and annotations…

MouseMine
Dataset

MouseMine

Supports powerful query, reporting, and analysis capabilities over a…

Supports powerful query, reporting, and analysis capabilities over a significant portion of the MGI database. The main source of MouseMine data is the Mouse Genome Informatics, which includes a…

Zebrafish…
Dataset

Zebrafish GenomeWiki

A ‘wiki’-based resource, which aims to provide an altruistic shared…

A ‘wiki’-based resource, which aims to provide an altruistic shared environment for collective annotation of the zebrafish genes.

eGOB
Web

eGOB eukaryotic Gene Order Browser

Views any eukaryotic gene and its genomic environment in different species.…

Views any eukaryotic gene and its genomic environment in different species. eGOB is an online tool that offers informations on the order of protein and non-coding RNA (ncRNA) genes of 74 different…

WildSilkbase
Dataset

WildSilkbase

Contains wild silkmoths. WildSilkbase is a catalogue of expressed sequence tags…

Contains wild silkmoths. WildSilkbase is a catalogue of expressed sequence tags (ESTs) generated from several tissues at different developmental stages of 3 economically important saturniid…

IntegromeDB
Dataset

IntegromeDB

A biological web search engine based on the Semantic Web technologies. The…

A biological web search engine based on the Semantic Web technologies. The IntegromeDB search engine allows scanning data on gene regulation, gene expression, protein-protein interactions, pathways,…

KAIKObase
Dataset

KAIKObase

Provides three data mining approaches (narrowing the range of data sets using…

Provides three data mining approaches (narrowing the range of data sets using PGmap or UnifiedMap of Chromosome Overview, Keyword and Position Search, Sequence Search using BLAST). KAIKObase is an…

KONAGAbase
Dataset

KONAGAbase

Provides DBM comprehensive transcriptomic and draft genomic sequences with…

Provides DBM comprehensive transcriptomic and draft genomic sequences with useful annotation information with easy-to-use web interfaces, which helps researchers to efficiently search for target…

HelmCoP
Dataset

HelmCoP Helminth Control and Prevention

An online resource built by integrating functional, structural and comparative…

An online resource built by integrating functional, structural and comparative genomic data from plant, animal and human helminthes, to enable researchers to develop strategies for drug, vaccine and…