Animal Genome Size Database statistics

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Animal Genome Size Database specifications

Information


Unique identifier OMICS_16749
Name Animal Genome Size Database
Restrictions to use None
Database management system MySQL
Community driven No
Data access File download, Browse
User data submission Not allowed
Version 2.0
Maintained Yes

Maintainer


  • person_outline Animal Genome Size Database Team

Animal Genome Size Database citations

 (8)
library_books

Finding Nemo: hybrid assembly with Oxford Nanopore and Illumina reads greatly improves the clownfish (Amphiprion ocellaris) genome assembly

2018
GigaScience
PMCID: 5848817
PMID: 29342277
DOI: 10.1093/gigascience/gix137

[…] Map [] estimated a haploid genome size of 967 Mbp. The genome sizes estimated from both approaches are within the range of sizes listed for other Amphiprion species (792 Mb–1.2 Gb) as reported on the Animal Genome Size Database []. […]

library_books

Draft genome of the milu (Elaphurus davidianus)

2017
GigaScience
PMCID: 5824821
PMID: 29267854
DOI: 10.1093/gigascience/gix130

[…] ilu genome size and obtained estimates of 3.00 Gb and 2.78 Gb, respectively [] (Fig. S2). All these estimated genome sizes are within the range of C values (2.22 to 3.44) reported for Cervidae in the Animal Genome Size Database [], indicating that our estimations are credible (Table S3). […]

library_books

De novo genome assembly and annotation of Australia's largest freshwater fish, the Murray cod (Maccullochella peelii), from Illumina and Nanopore sequencing read

2017
GigaScience
PMCID: 5597895
PMID: 28873963
DOI: 10.1093/gigascience/gix063

[…] . The resulting analysis shows that the haploid genome size was between 640 and 669 Mbp for the Murray cod (Fig. ), a figure smaller than the 812 Mbp (C-value: 0.83 pg) estimated size reported on the Animal Genome Size Database [, ]. This smaller estimate may be due to an additional parameter introduced in GenomeScope, set to exclude extremely high-frequency kmers as these likely represent organel […]

call_split

Comparative genomics reveals contraction in olfactory receptor genes in bats

2017
Sci Rep
PMCID: 5427940
PMID: 28325942
DOI: 10.1038/s41598-017-00132-9
call_split See protocol

[…] The genome size (C-value) for each of our sampled species was obtained from the Animal Genome Size Database. If the exact species did not have an entry in the database, we used an expected C-value calculated from the average C-value from other species of the same genus. Nonparame […]

library_books

Insights into the evolution of Darwin’s finches from comparative analysis of the Geospiza magnirostris genome sequence

2013
BMC Genomics
PMCID: 3575239
PMID: 23402223
DOI: 10.1186/1471-2164-14-95

[…] pproximately 89% of the euchromatic genome or approximately 76% of the complete genome. The estimated 1.250 Gb size of the G. magnirostris genome is similar to the mean avian genome size (1.38Gb, []. Animal Genome Size Database. http://www.genomesize.com).We expect this G. magnirostris genome assembly to be most incomplete within highly repetitive sequence. Use of either a library of transposable […]

library_books

Exploring Pandora's Box: Potential and Pitfalls of Low Coverage Genome Surveys for Evolutionary Biology

2012
PLoS One
PMCID: 3504011
PMID: 23185309
DOI: 10.1371/journal.pone.0049202

[…] ses the contigs were uploaded into a custom MySQL database (MySQL-server v. 5.1.44) . All of the filtering steps and the final dataset production were performed in the database using SQL-commands.The Animal Genome Size Database was used as a primary resource to obtain genome sizes to compute approximate genomic coverages for the libraries. We selected the closest relatives to our target species f […]

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