Strives to collect all publicly available trait mapping data, i.e. QTL (phenotype/expression, eQTL), candidate gene and association data (GWAS), and copy number variations (CNV) mapped to livestock animal genomes, in order to facilitate locating and comparing discoveries within and between species. New data and database tools are continually developed to align various trait mapping data to map-based genome features such as annotated genes.

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Animal QTLdb classification

  • Animals

Animal QTLdb specifications

Restrictions to use:
None
User data submission:
Allowed
Data access:
File download, Web user interface, Web service
Version:
Animal QTLdb release 28

Publications

  • (Hu et al., 2015) Developmental progress and current status of the Animal QTLdb. Nucleic acids research.
    PMID: 26602686
  • (Hu et al., 2013) Animal QTLdb: an improved database tool for livestock animal QTL/association data dissemination in the post-genome era. Nucleic acids research.
    PMID: 23180796
  • (Hu and Reecy, 2007) Animal QTLdb: beyond a repository. A public platform for QTL comparisons and integration with diverse types of structural genomic information. Mammalian genome.
    PMID: 17245610
  • (Hu et al., 2007) AnimalQTLdb: a livestock QTL database tool set for positional QTL information mining and beyond. Nucleic acids research.
    PMID: 17135205

Animal QTLdb support

Maintainer

Credits

Institution(s)

Department of Animal Science, Iowa State University, 2255 Kildee Hall, Ames, IA 50011, USA

Funding source(s)

USDA NRSP-8 National Animal Genome Research Program, Bioinformatics Coordination Project and USDA-AFRI [2013-67015-21210]

Link to literature

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