AnkPred specifications

Information


Unique identifier OMICS_11570
Name AnkPred
Alternative name Ankyrin Repeat Identification by Graph Spectral Analysis
Interface Web user interface
Restrictions to use None
Input data A user can enter a PDB Id or upload a structure in PDB format as input and identify ANK repeats by choosing the chain.
Output data The output of the tool gives the number of predicted repeat copies, the coordinates of the repeat units and the 3-dimensional structure of the protein with each repeat unit highlighted in a different color, the non-repeat region being in grey.
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Nita Parekh <>

Information


Unique identifier OMICS_11570
Name AnkPred
Alternative name Ankyrin Repeat Identification by Graph Spectral Analysis
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Python
Computer skills Advanced
Stability Stable
Requirements Numpy, STRIDE
Maintained Yes

Versioning


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Maintainer


  • person_outline Nita Parekh <>

Publication for Ankyrin Repeat Identification by Graph Spectral Analysis

AnkPred institution(s)
Centre for Computational Natural Sciences and Bioinformatics, International Institute of Information Technology, Hyderabad, India
AnkPred funding source(s)
The authors acknowledge the support of CSIR for funding this work (37(1468)/11/EMR-II).

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