AnkPred specifications
- Unique identifier:
- OMICS_11570
- Interface:
- Web user interface
- Input data:
- A user can enter a PDB Id or upload a structure in PDB format as input and identify ANK repeats by choosing the chain.
- Computer skills:
- Basic
- Maintained:
- Yes
- Name:
- Ankyrin Repeat Identification by Graph Spectral Analysis
- Restrictions to use:
- None
- Output data:
- The output of the tool gives the number of predicted repeat copies, the coordinates of the repeat units and the 3-dimensional structure of the protein with each repeat unit highlighted in a different color, the non-repeat region being in grey.
- Stability:
- Stable
AnkPred specifications
- Unique identifier:
- OMICS_11570
- Software type:
- Package/Module
- Restrictions to use:
- None
- Programming languages:
- Python
- Stability:
- Stable
- Maintained:
- Yes
- Name:
- Ankyrin Repeat Identification by Graph Spectral Analysis
- Interface:
- Command line interface
- Operating system:
- Unix/Linux
- Computer skills:
- Advanced
- Requirements:
- Numpy, STRIDE
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AnkPred support
Maintainer
- Nita Parekh <>
- Nita Parekh <>
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Publications
-
(Chakrabarty and Parekh, 2014)
Identifying tandem Ankyrin repeats in protein structures.
BMC Bioinformatics.
PMID: 25547411 DOI: 10.1186/s12859-014-0440-9
Institution(s)
Centre for Computational Natural Sciences and Bioinformatics, International Institute of Information Technology, Hyderabad, India
Funding source(s)
The authors acknowledge the support of CSIR for funding this work (37(1468)/11/EMR-II).
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