AnkPred specifications
Information
| Unique identifier | OMICS_11570 |
|---|---|
| Name | AnkPred |
| Alternative name | Ankyrin Repeat Identification by Graph Spectral Analysis |
| Interface | Web user interface |
| Restrictions to use | None |
| Input data | A user can enter a PDB Id or upload a structure in PDB format as input and identify ANK repeats by choosing the chain. |
| Output data | The output of the tool gives the number of predicted repeat copies, the coordinates of the repeat units and the 3-dimensional structure of the protein with each repeat unit highlighted in a different color, the non-repeat region being in grey. |
| Computer skills | Basic |
| Stability | Stable |
| Maintained | Yes |
Maintainer
- person_outline Nita Parekh <>
Information
| Unique identifier | OMICS_11570 |
|---|---|
| Name | AnkPred |
| Alternative name | Ankyrin Repeat Identification by Graph Spectral Analysis |
| Software type | Package/Module |
| Interface | Command line interface |
| Restrictions to use | None |
| Operating system | Unix/Linux |
| Programming languages | Python |
| Computer skills | Advanced |
| Stability | Stable |
| Requirements | Numpy, STRIDE |
| Maintained | Yes |
Versioning
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Maintainer
- person_outline Nita Parekh <>
AnkPred article
2014 BMC Bioinformatics
PMID: 25547411
DOI: 10.1186/s12859-014-0440-9
AnkPred institution(s)
Centre for Computational Natural Sciences and Bioinformatics, International Institute of Information Technology, Hyderabad, India
AnkPred funding source(s)
The authors acknowledge the support of CSIR for funding this work (37(1468)/11/EMR-II).
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