Protocols

anNET specifications

Information


Unique identifier OMICS_06494
Name anNET
Software type Package/Module
Interface Command line interface
Restrictions to use Academic or non-commercial use
Operating system Unix/Linux, Mac OS, Windows
Programming languages MATLAB
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


No version available

Publication for anNET

anNET citations

 (2)
call_split

Systematic Applications of Metabolomics in Metabolic Engineering

2012
PMCID: 3901235
PMID: 24957776
DOI: 10.3390/metabo2041090
call_split See protocol

[…] method can assess the internal consistency of a metabolomics dataset, predict thermodynamically feasible ranges for unmeasured metabolites, and identify putative sites of transcriptional regulation. anNET is a MATLAB implementation of the algorithm designed to facilitate straightforward application of NET analysis []. NET analysis of a metabolomics dataset for S. cerevisiae revealed a thermodynam […]

library_books

Dynamic metabolomics differentiates between carbon and energy starvation in recombinant Saccharomyces cerevisiae fermenting xylose

2012
Biotechnol Biofuels
PMCID: 3462113
PMID: 22587303
DOI: 10.1186/1754-6834-5-34

[…] strain. The final data set consisted of 185 samples and 44 measured metabolites.The thermodynamic feasibility of 38 out of the 44 metabolite ranges measured in the XR/XDH-strain were validated using anNET toolbox []. These 38 metabolites were quantified using external standards. The metabolites that could not be quantified, due to lack of standards, were sedoheptulose 7-phosphate (S7P), acetyl-Co […]

anNET institution(s)
ETH Zurich, Institute of Molecular Systems Biology, Zurich, Switzerland
anNET funding source(s)
Supported by the ETH Zurich.

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