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Anni specifications

Information


Unique identifier OMICS_07921
Name Anni
Interface Web user interface
Restrictions to use None
Programming languages Java
Computer skills Basic
Version 2.1
Stability No
Maintained No

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This tool is not available anymore.

Publications for Anni

Anni in publications

 (16)
PMCID: 5716440
PMID: 29039494
DOI: 10.3892/ijmm.2017.3175

[…] and cholinergic synapse. ten genes, sos1, raf1, ifna2, ifng, mthfr, igf1, calm3, ube2b, tp53 and bmp7 whose expression may be the key internal driving molecules, were selected using the online tool anni 2.1. furthermore, the present study demonstrated the internal linkages between systemic manifestations and hcv infection, and presented the potential molecules that are key to those linkages., […]

PMCID: 4857381
PMID: 27152122
DOI: 10.1186/s13040-016-0096-2

[…] next generation of text mining approaches have to deal with the construction of complete text mining systems to aid the inference of interactions or associations between bio entities. ontogene [], anni [], rlism [], and crab [] are examples of such next generation systems. in terms of usage, ontogene is considered the most integrative because it allows the detection of entities […]

PMCID: 4695084
PMID: 26713731
DOI: 10.1371/journal.pone.0144302

[…] using the specific tissue in the name field., to investigate whether tissue-specific splice junctions were from genes with known tissue associations, text mining was performed with the tool anni 2.1 []. anni can take two sets of concepts, such as a user supplied list of genes and either go biological processes or tissue (both supplied as predefined concept sets in anni), and can derive […]

PMCID: 4172731
PMID: 25247782
DOI: 10.1371/journal.pone.0108510

[…] for kegg pathways. the statistically enriched go terms were grouped and counted after classification according to go slim using the freely available web tool categorizer . the text-mining tool anni was also used to explore matching concept profiles of gene clusters with concept profiles of biological processes in the go database. the program calculates the overall matching score, […]

PMCID: 3922429
PMID: 24507464
DOI: 10.1186/1743-8977-11-8

[…] performed to discover the differential expression of biologically relevant sets of genes []. for this, several genes sets related to common liver processes were composed using the text-mining tool anni 2.0 (http://www.biosemantics.org/anni) []. furthermore, several gene sets related to specific toxicological responses in the liver, composed from literature and/or in-house data were used, […]


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Anni institution(s)
Department of Medical Informatics, Erasmus MC University Medical Center, Dr. Molewaterplein, Rotterdam, The Netherlands; Department of Pathology, Erasmus MC University Medical Center, Dr. Molewaterplein, Rotterdam, The Netherlands; Department of Urology, Erasmus MC University Medical Center, Dr. Molewaterplein, Rotterdam, The Netherlands
Anni funding source(s)
Supported by an ErasmusMC Breedtestrategie grant, INFOBIOMED, 6th R&D Framework, EC (IST 2002 507585), and by the Biorange project sp 4.1.1 of the Netherlands Bioinformatics Centre.

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