Annmap statistics

info info

Citations per year

Number of citations per year for the bioinformatics software tool Annmap

Tool usage distribution map

This map represents all the scientific publications referring to Annmap per scientific context
info info

Associated diseases


Popular tool citations

chevron_left Gene expression microarray data visualization chevron_right
Want to access the full stats & trends on this tool?


Annmap specifications


Unique identifier OMICS_00900
Name Annmap
Interface Web user interface
Restrictions to use None
Biological technology Affymetrix
Computer skills Basic
Stability No
Maintained No


This tool is not available anymore.

Publications for Annmap

Annmap citations


24h gene variation effect of combined bevacizumab/erlotinib in advanced non squamous non small cell lung cancer using exon array blood profiling

J Transl Med
PMCID: 5372268
PMID: 28359318
DOI: 10.1186/s12967-017-1174-z

[…] , 439,778 exonic probe sets (within 38,900 genes) were kept in the analysis, after filtering out intronic, intergenic and unreliable probe sets (according to the nomenclature defined in the R package annmap []). Raw data (Affymetrix CEL files) have been deposited in NCBI’s Gene Expression Omnibus (GEO), and are accessible through GEO Series accession number GSE61676. The exon level probe sets were […]


Hypoxia driven splicing into noncoding isoforms regulates the DNA damage response

PMCID: 5417364
PMID: 28480052
DOI: 10.1038/npjgenmed.2016.20
call_split See protocol

[…] and supplied to edgeR to call differential expression (absolute fold-change >2 relative to 0 h; false discovery rate (FDR) <1%) at each time point. Annotation was supplied by the Bioconductor package annmap. […]


SOX7 enforced expression promotes the expansion of adult blood progenitors and blocks B cell development

Open Biol
PMCID: 4967825
PMID: 27411892
DOI: 10.1098/rsob.160070

[…] se array remained for differential gene expression analysis. Annotations and cross-mappings between probesets, exons and genes were obtained from Ensembl mouse genome using the R/BioConductor package Annmap (BioConductor 2.14). […]


Evaluation and validation of a robust single cell RNA amplification protocol through transcriptional profiling of enriched lung cancer initiating cells

BMC Genomics
PMCID: 4320548
PMID: 25519510
DOI: 10.1186/1471-2164-15-1129

[…] alue calculated by panp was less than 0.05. For each replicate, the present probesets were mapped to the genes using the ENSEMBL human gene annotation database version 70 via the BioConductor package annmap []. Gene lists for one sample were compiled from the two replicates, containing the genes which were present in both replicates.Data for the MCF7 and MCF10A samples were generated using Affymet […]


Epithelial and Stromal MicroRNA Signatures of Columnar Cell Hyperplasia Linking Let 7c to Precancerous and Cancerous Breast Cancer Cell Proliferation

PLoS One
PMCID: 4133372
PMID: 25122196
DOI: 10.1371/journal.pone.0105099
call_split See protocol

[…] uctor and Ingenuity Systems (Redwood City, CA). The RMA was used to normalise and summarise the expression values at the probeset level . Probesets were mapped to genes using the Bioconductor package annmap to position probesets relative to Ensembl version 60 annotations . The R package Limma was used to find differentially expressed genes and Ingenuity to find the enriched pathways from the diff […]


A global non coding RNA system modulates fission yeast protein levels in response to stress

Nat Commun
PMCID: 4050258
PMID: 24853205
DOI: 10.1038/ncomms4947

[…] yield an extensive transcription map of S. pombe. These regions were then positioned relative to known annotation and labelled according to the gene(s) they overlapped, using the Bioconductor package annmap. Next, we identified for each transcribed locus its 5′- and 3′-extent in a given sample. Subsequent analysis was performed in R and Bioconductor software unless otherwise stated. […]

Want to access the full list of citations?
Annmap institution(s)
Cancer Research UK, Bioinformatics Group, Paterson Institute for Cancer Research, The University of Manchester, Christie Hospital Site, Wilmslow Road, Withington, Manchester, UK

Annmap reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review Annmap