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Annocript

Combines the annotation of protein coding transcripts with the prediction of putative lncRNAs in whole transcriptomes. Annocript downloads and indexes the needed databases, runs the analysis and produces human readable and standard outputs together with summary statistics of the whole analysis.

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Annocript classification

Annocript specifications

Software type:
Pipeline/Workflow
Restrictions to use:
None
Input format:
FASTA
Database management system:
MySQL
Computer skills:
Advanced
Stability:
Stable
Maintained:
Yes
Interface:
Command line interface
Input data:
A transcriptome
Operating system:
Unix/Linux
License:
GNU General Public License version 2.0
Version:
0.2
Requirements:
MySQL database server, Perl, BioPerl, Python, R, Blast+, Portrait, dna2pep

Annocript distribution

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Annocript support

Documentation

Maintainer

  • Remo Sanges <>

Credits

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Publications

Institution(s)

Laboratory of Animal Physiology and Evolution, Napoli, Italy

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