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AnnoLite specifications

Information


Unique identifier OMICS_26615
Name AnnoLite
Interface Web user interface
Restrictions to use None
Input data A PDB chain code and thresholds for filtering sequence and structure similarities.
Output data An automatic annotation of the protein structures.
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Marc A. Marti-Renom

Publications for AnnoLite

AnnoLite citations

 (2)
library_books

Rapid Catalytic Template Searching as an Enzyme Function Prediction Procedure

2013
PLoS One
PMCID: 3651201
PMID: 23675414
DOI: 10.1371/journal.pone.0062535

[…] , , evolutionary trace , intrepid , phylofacts , , and bayesian monte carlo inference . that combine sequence and structural information include eficaz , , soippa –, discern , pevosoar , and annolite and can provide improvements to sequence based methods alone. the success of global similarity-based techniques depends largely on the ability to distinguish conservation patterns […]

library_books

The 2006 Automated Function Prediction Meeting

2007
BMC Bioinformatics
PMCID: 1892079
PMID: 17570143
DOI: 10.1186/1471-2105-8-S4-S1

[…] rates range from 0 to 13.6%, mostly reflecting the inability of sequence similarity search procedures to detect substrate specificity., marti-renom and colleagues [] introduce two new programs, annolite and annolyze, which add functional content to the previously established dbali database of protein structure alignments []. the annolite program utilizes structural alignments to transfer […]


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AnnoLite institution(s)
Structural Genomics Unit, University of California at San Francisco, San Francisco, CA, USA; Departments of Biopharmaceutical Sciences and Pharmaceutical Chemistry University of California at San Francisco, San Francisco, CA, USA; California Institute for Quantitative Biomedical Research, University of California at San Francisco, San Francisco, CA, USA; Functional Genomics Unit, Bioinformatics Department, Centro de Investigacion Principe Felipe (CIPF), Valencia, Spain
AnnoLite funding source(s)
Supported by The Sandler Family Supporting Foundation, NIH grants GM 62529, GM074929, GM71790 and GM54762.

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