annotatingTranscriptomes protocols

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annotatingTranscriptomes specifications

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Unique identifier OMICS_20685
Name annotatingTranscriptomes
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Perl
Computer skills Advanced
Stability Stable
Maintained Yes

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Maintainers


  • person_outline Mikhail V. Matz <>
  • person_outline Carly Kenkel <>
  • person_outline Line Bay <>

Publication for annotatingTranscriptomes

annotatingTranscriptomes in pipeline

2017
PMCID: 5600903
PMID: 28955327
DOI: 10.3389/fimmu.2017.01071

[…] described procedures (). code for the irnaseq pipeline can be found here: https://github.com/z0on/tag-based_rnaseq. code for the annotation pipeline can be found here: https://github.com/z0on/annotatingtranscriptomes., we scanned for outliers using arrayqualitymetrics () and removed one sample because of insufficient read depth (final nā€‰=ā€‰98). to test for differential gene expression, […]


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annotatingTranscriptomes institution(s)
Australian Institute of Marine Science, Townsville MC, QLD, Australia; Department of Biological Sciences, University of Southern California, Trousdale Parkway, Los Angeles, CA, USA
annotatingTranscriptomes funding source(s)
Supported by an NSF International Postdoctoral Research Fellowship, DBI- 1401165 and funding from the Australian Institute of Marine Science.

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