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Annotation Retrieval of Gene Ontology Terms Argot

Online

Allows to predict protein function. The Argot strategy treats the grouping of Gene Ontology (GO) terms by means of semantic similarity in order to infer protein function. Compared to the previous version, the 2.5 version allows users to realize the selection of the input data from sequence similarity searches performed against a clustered version of UniProt databank and a remodeling of the weights given to Pfam hits. It’s also possible with the application of taxonomic constraints to classify annotations that cannot be applied to proteins belonging to the species through investigation.

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Argot classification

Argot specifications

Interface:
Web user interface
Input data:
Some sequences.
Computer skills:
Basic
Stability:
Stable
Restrictions to use:
Academic or non-commercial use
Input format:
FASTA
Version:
2.5
Maintained:
Yes

Argot support

Maintainer

  • Stefano Toppo <>

Credits

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Publications

Institution(s)

Department of Molecular Medicine, University of Padova, Padova, Italy; Istituto Agrario San Michele all’Adige Research and Innovation Centre, Foundation Edmund Mach, Trento, Italy

Funding source(s)

Supported by ‘‘progetto d’Ateneo” PRAT CPDA138081/13, Grant ‘‘assegno senior” and ‘‘bando giovani studiosi” GRIC13AAI9 from University of Padova.

Link to literature

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