AnnotationSketch protocols

View AnnotationSketch computational protocol

AnnotationSketch statistics

To access cutting-edge analytics on consensus tools, life science contexts and associated fields, you will need to subscribe to our premium service.

Subscribe
info

Citations per year

Citations chart
info

Popular tool citations

chevron_left Gene visualization chevron_right
Popular tools chart
info

Tool usage distribution map

Tool usage distribution map
info

Associated diseases

Associated diseases

AnnotationSketch specifications

Information


Unique identifier OMICS_16093
Name AnnotationSketch
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages C
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


Add your version

Maintainer


  • person_outline Sascha Steinbiss <>

Publication for AnnotationSketch

AnnotationSketch in pipeline

2016
PMCID: 4860699
PMID: 27071651
DOI: 10.1093/gbe/evw070

[…] be able to screen the genomes for potential hgt (supplementary table s2, supplementary material online). multiple sequence alignments were done using clustalω (). visualization of the results used annotationsketch () and circos () and rna structure prediction used the rnafold server ()., bacterial suspensions of b. vulgatus mpk and atcc 8482 at the same optical density (mcfarland 1) […]


To access a full list of citations, you will need to upgrade to our premium service.

AnnotationSketch in publications

 (2)
PMCID: 4860699
PMID: 27071651
DOI: 10.1093/gbe/evw070

[…] be able to screen the genomes for potential hgt (supplementary table s2, supplementary material online). multiple sequence alignments were done using clustalω (). visualization of the results used annotationsketch () and circos () and rna structure prediction used the rnafold server ()., bacterial suspensions of b. vulgatus mpk and atcc 8482 at the same optical density (mcfarland 1) […]

PMCID: 3637828
PMID: 23575357
DOI: 10.1186/1471-2164-14-239

[…] with pasa [], microarray tiling path expression data, and rna-seq data from wfleabase [] were used as supporting evidence for exon annotations. the dsx gene annotation figures were created with annotationsketch [] (figure )., matscan [] was used to search for matches to 125 jaspar core insect tfbs matrices and 44 transfac insect tfbs matrices in each dsx promoter region in d. magna and d. […]


To access a full list of publications, you will need to upgrade to our premium service.

AnnotationSketch institution(s)
Center for Bioinformatics, University of Hamburg, Hamburg, Germany

AnnotationSketch reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review AnnotationSketch