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AnnotationSketch specifications

Information


Unique identifier OMICS_16093
Name AnnotationSketch
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages C
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


No version available

Maintainer


  • person_outline Sascha Steinbiss <>

Publication for AnnotationSketch

AnnotationSketch citations

 (2)
library_books

Extensive Mobilome Driven Genome Diversification in Mouse Gut Associated Bacteroides vulgatus mpk

2016
PMCID: 4860699
PMID: 27071651
DOI: 10.1093/gbe/evw070

[…] be able to screen the genomes for potential hgt (supplementary table s2, supplementary material online). multiple sequence alignments were done using clustalω (). visualization of the results used annotationsketch () and circos () and rna structure prediction used the rnafold server ()., bacterial suspensions of b. vulgatus mpk and atcc 8482 at the same optical density (mcfarland 1) […]

library_books

Molecular cloning of doublesex genes of four cladocera (water flea) species

2013
PMCID: 3637828
PMID: 23575357
DOI: 10.1186/1471-2164-14-239

[…] with pasa [], microarray tiling path expression data, and rna-seq data from wfleabase [] were used as supporting evidence for exon annotations. the dsx gene annotation figures were created with annotationsketch [] (figure )., matscan [] was used to search for matches to 125 jaspar core insect tfbs matrices and 44 transfac insect tfbs matrices in each dsx promoter region in d. magna and d. […]


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AnnotationSketch institution(s)
Center for Bioinformatics, University of Hamburg, Hamburg, Germany

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