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AnnotationSketch specifications

Information


Unique identifier OMICS_16093
Name AnnotationSketch
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages C
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


No version available

Maintainer


  • person_outline Sascha Steinbiss

Publication for AnnotationSketch

AnnotationSketch citations

 (3)
library_books

Extensive Mobilome Driven Genome Diversification in Mouse Gut Associated Bacteroides vulgatus mpk

2016
Genome Biol Evol
PMCID: 4860699
PMID: 27071651
DOI: 10.1093/gbe/evw070

[…] nd be able to screen the genomes for potential HGT (supplementary table S2, Supplementary Material online). Multiple sequence alignments were done using ClustalΩ (). Visualization of the results used AnnotationSketch () and Circos () and RNA structure prediction used the RNAfold server (). […]

library_books

SVGenes: a library for rendering genomic features in scalable vector graphic format

2013
Bioinformatics
PMCID: 3712214
PMID: 23749959
DOI: 10.1093/bioinformatics/btt294

[…] lar genomes in particular. GenomeDiagram () is designed to display large amounts of comparative genomics data. MGV () is a database-driven web application designed specifically for microbial data and AnnotationSketch (), which is dependant on third-party software. SVGenes is a pure Ruby language library that allows a user to set styles for tracks of genomic features and will automatically layout a […]

library_books

Molecular cloning of doublesex genes of four cladocera (water flea) species

2013
BMC Genomics
PMCID: 3637828
PMID: 23575357
DOI: 10.1186/1471-2164-14-239

[…] embly with PASA [], microarray tiling path expression data, and RNA-Seq data from wFleaBase [] were used as supporting evidence for exon annotations. The dsx gene annotation figures were created with AnnotationSketch [] (Figure ). […]

Citations

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AnnotationSketch institution(s)
Center for Bioinformatics, University of Hamburg, Hamburg, Germany

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