anota2seq statistics

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Tool usage distribution map

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Associated diseases

Associated diseases

anota2seq specifications

Information


Unique identifier OMICS_20340
Name anota2seq
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


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Maintainers


  • person_outline Ola Larsson <>
  • person_outline Ivan Topisirovic <>

Publication for anota2seq

anota2seq in publication

PMCID: 5758873
PMID: 29069469
DOI: 10.1093/nar/gkx940

[…] p53−/− cell lines. differential expression analysis was performed using t-tests applying rvm (random variance model) (), including the replicate number as factor in the models as implemented in the anota2seq r package (available at bioconductor). p-values were adjusted using the benjamini–hochberg (bh) method () and a false discovery rate (fdr) < 0.1 was considered significant. […]


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anota2seq institution(s)
Department of Oncology-Pathology, Science for Life Laboratory, Karolinska Institutet, Stockholm, Sweden; Lady Davis Institute, SMBD Jewish General Hospital, Montreal, Canada; Departments of Oncology, Experimental Medicine, and Biochemistry McGill University, Montreal, Canada; Cancer Program, Biomedicine Discovery Institute and Department of Anatomy & Developmental Biology, Monash University, VIC, Australia; Prostate Cancer Translational Research Laboratory, Peter MacCallum Cancer Centre, Melbourne, VIC, Australia

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