antaRNA statistics

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Associated diseases

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antaRNA specifications

Information


Unique identifier OMICS_08738
Name antaRNA
Alternative name Ant assembled RNA
Software type Application/Script
Interface Command line interface
Restrictions to use None
Output data RNA sequences
Output format FASTA
Operating system Unix/Linux, Mac OS
Programming languages Python
License MIT License
Computer skills Advanced
Version 1.1.4
Stability Stable
Requirements
RNAfold, pKiss_mfe, numpy
Maintained Yes

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Maintainer


  • person_outline Rolf Backofen <>

Information


Unique identifier OMICS_08738
Name antaRNA
Alternative name Ant assembled RNA
Interface Web user interface
Restrictions to use None
Input data RNA Structure constraint, RNA sequence constraint
Output data RNA sequences
Output format FASTA
Programming languages Python
License MIT License
Computer skills Basic
Version 1.1.2
Stability Stable
Maintained Yes

Maintainer


  • person_outline Rolf Backofen <>

Publications for Ant assembled RNA

antaRNA in publication

PMCID: 5123390
DOI: 10.1186/s12864-016-3105-4

[…] order for it to be able to fulfill its function? equally for the rna design problem, most methods are based on local searches, from a random search as in rnainverse [] or with an ant algorithm as in antarna-ant []. the observed diversity in the quality of sequences at a minimal distance from each other demonstrates the need of more global tools, like the one of incarnation [] for example., […]


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antaRNA institution(s)
Bioinformatics Group, Department of Computer Science, University of Freiburg, Freiburg, Germany; Center for Biological Signaling Studies (BIOSS), University of Freiburg, Freiburg, Germany; Center for Biological Systems Analysis (ZBSA), University of Freiburg, Freiburg, Germany; Center for non-coding RNA in Technology and Health, University of Copenhagen, Copenhagen, Denmark
antaRNA funding source(s)
This work was funded by the Baden-W├╝rttemberg Ministry of Science, Research and Arts (MWK grant 7533-7-11.6.1 Ideenwettbewerb Biotechnologie und Medizintechnik Baden-W├╝rttemberg, Germany).

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