ANTHEPROT protocols

View ANTHEPROT computational protocol

ANTHEPROT statistics

To access cutting-edge analytics on consensus tools, life science contexts and associated fields, you will need to subscribe to our premium service.

Subscribe
info

Citations per year

Citations chart
info

Popular tool citations

chevron_left Secondary structure prediction Multiple structure alignment Structure visualization Function prediction Sequence alignment visualization Solvent accessibility prediction Solubility prediction Flexibility prediction Hydrophobic region prediction chevron_right
Popular tools chart
info

Tool usage distribution map

Tool usage distribution map
info

Associated diseases

Associated diseases

ANTHEPROT specifications

Information


Unique identifier OMICS_20419
Name ANTHEPROT
Alternative name ANTHEPROT 3D
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Windows
Computer skills Advanced
Version 6.9.0
Stability Stable
Maintained Yes

Subtool


  • ALIGNSEC

Download


Versioning


Add your version

Documentation


Maintainer


  • person_outline Gilbert Deleage <>

Publications for ANTHEPROT

ANTHEPROT in pipelines

 (4)
2013
PMCID: 3851475
PMID: 24093777
DOI: 10.1186/1475-2875-12-356

[…] and 36115 (cg719aaevekrgfdedyiqeeikn 738gc). these peptides were selected based on high average values for parker’s antigenicity, hydrophilicity and solvent accessibility using antheprot software [] and high values obtained when using bepipred (0.35 default threshold and 75% specificity) []. it was also taken into account that the peptides corresponded to different protein […]

2012
PMCID: 3280521
PMID: 22355451
DOI: 10.3390/v4010028

[…] []. conserved domain searches were performed using the smart [] and cd-search [] computer programs with swiss-prot and cdd [] databases. cgc [], emboss [], psort [], tmhmm [,], signalp 3.0 [], and antheprot [] computer programs were used for general analysis, signal peptide prediction, transmembrane domain prediction, and physical characterization of proteins. phylogenetic analysis […]

2011
PMCID: 3215230
PMID: 22024312
DOI: 10.1186/1475-2875-10-314

[…] and a gpi-anchor sequence was determined by signalp 3.0 [], xstream repeat [] and gpi-anchor [] bioinformatics tools, respectively. putative domains were assessed using the interpro database []. antheprot software [] was used for determining two peptides throughout the pvron1 hypothetical sequence (plasmodb accession number: pvx_000945) that could be good b-cell epitopes, taking the highest […]

2010
PMCID: 2891697
PMID: 20585611
DOI: 10.1371/journal.pcbi.1000824

[…] localization had been confirmed by proteomics and two additional proteins obtained from the prediction analysis carried out over the entire genome., linear b cell epitopes were predicted using antheprot, which is available at http://antheprot-pbil.ibcp.fr/ and the bepipred 1.0 server available at http://www.cbs.dtu.dk/services/bepipred/. linear b cell epitopes predicted by bepipred […]


To access a full list of citations, you will need to upgrade to our premium service.

ANTHEPROT in publications

 (27)
PMCID: 5855822
PMID: 29463000
DOI: 10.3390/ijms19020600

[…] lps binding to lbp, without obvious toxicity, thus offering a promising novel strategy against lps-induced inflammatory responses. , the primary sequence analysis of awrk6 was performed using antheprot 6.9.1, and the secondary structure was predicted by the grbrat method []., the peptide awrk6 were synthesized by gl biochem corporation (shanghai, china) using solid-phase synthesis method, […]

PMCID: 5458668
PMID: 28550277
DOI: 10.12659/MSM.902095

[…] properties of antibacterial peptide ll-37 were analyzed using the swiss-model online prediction tool; comparative analysis was made using the amino acid sequence with swiss-model and blast on ncbi. antheprot6.6.6 software was used to analyze the structure of antibacterial peptide ll-37., adf2014 (amsterdam density functional) was used to set reaxff simulation parameters and conditions; four […]

PMCID: 5437554
PMID: 28526010
DOI: 10.1186/s12886-017-0476-5

[…] 60 °c for 30 s, 72 °c for 30 s (30 cycles); 72 °c for 10 min (1 cycle)., the effects of wild-type amino acid sequences with the p. d47n mutant of cx50 on the secondary structure were performed using antheprot 2000 software (version 6.6.5, ibcp, lypn, france). the solved structure of gap junction protein beta 2(cx26) was taken as template (protein data bank no.2zw3). the model structure […]

PMCID: 5172412
PMID: 15626343
DOI: 10.1016/S1672-0229(03)01017-9

[…] to determine orf, dna_gc_calculator (http://www.genome.iastate.edu/ftp/share/dnagccal/) to analyze the gc content, and the emboss program (http://www.hgmp.mrc.ac.uk/software/emboss/apps/) and antheprot 5.0 (http://antheprot-pbil.ibcp.fr/) for physical and biochemical features prediction. for tm region prediction we used tmhmm (http://www.cbi.dtu.dk/services/tmhmm/), toppred2 […]

PMCID: 4892889
PMID: 27099988
DOI: 10.7554/eLife.15545.019

[…] by the presence of the polyaspartic tail, and mcu by the conserved dime loop. multiple sequence alignment was performed using the clustalw2 online server (). the helical wheels were plotted using antheprot v 6.4 (). mitochondrial targeting sequence prediction was carried out using the targetp 1.1 online server ()., whole cell rna was extracted from hek 293 cells grown in 6-well plates using […]


To access a full list of publications, you will need to upgrade to our premium service.

ANTHEPROT institution(s)
Lyon University- CNRS, LBTI-UMR5305, Institute of Biology and Chemistry of Proteins, Lyon, France
ANTHEPROT funding source(s)
Supported by the CNRS and University funds.

ANTHEPROT reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review ANTHEPROT