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Antibiotic resistance gene detection software tools | Shotgun metagenomic sequencing data analysis

Environmental dissemination of antibiotic resistance genes (ARGs) has become an increasing concern for public health. Metagenomics approaches can effectively detect broad profiles of ARGs in environmental samples; however, the detection and…
PATRIC
Dataset

PATRIC Pathosystems Resource Integration Center

Aims to assist scientists in infectious-disease research. PATRIC is a National…

Aims to assist scientists in infectious-disease research. PATRIC is a National Institute of Health (NIH) supported bioinformatics resource center that has been built to enable comparative genomic…

G T A T C G C T A
ARGs-OAP
Web

ARGs-OAP

Allows users to determine antibiotic resistance genes (ARGs) profiles from…

Allows users to determine antibiotic resistance genes (ARGs) profiles from large numbers of environmental samples in a single run. ARGs-OAP is an online analysis pipeline that aims to exploit the…

G T A T C G C T A
SEAR
Web
Desktop

SEAR Search Engine for Antimicrobial Resistance

Identifies quickly and accurately antimicrobial resistance information from…

Identifies quickly and accurately antimicrobial resistance information from biological samples. SEAR is an automated pipeline that provides abundance estimates and returns the true sample full-length…

G T A T C G C T A
MetaCherchant
Desktop

MetaCherchant

Extracts the genomic environment of antibiotic resistance genes from…

Extracts the genomic environment of antibiotic resistance genes from metagenomic data in the form of a graph. The MetaCherchant algorithm was validated on simulated datasets and applied to new…

G T A T C G C T A
DeepARG
Web
Desktop

DeepARG

Offers a powerful approach for metagenomic profiling of antibiotic resistance…

Offers a powerful approach for metagenomic profiling of antibiotic resistance genes (ARGs) in environmental compartments. DeepARG is a computational resource for the identification and annotation of…

G T A T C G C T A
MIL-ALIGN
Dataset

MIL-ALIGN

Gathers a set of 14 ionizing-Radiation Resistant Bacteria (IRRB) and 14…

Gathers a set of 14 ionizing-Radiation Resistant Bacteria (IRRB) and 14 ionizing-radiation-sensitive bacteria (IRSB). MIL-ALIGN supplies information about proteins involved in basal DNA repair in…

G T A T C G C T A
ResFinder
Dataset

ResFinder

Uses whole genome sequencing (WGS) data for identifying acquired antimicrobial…

Uses whole genome sequencing (WGS) data for identifying acquired antimicrobial resistance genes in bacteria. The current version only covers horizontally acquired resistance genes and not resistance…

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