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Associated diseases

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Antibp specifications

Information


Unique identifier OMICS_05751
Name Antibp
Alternative names AntiBacterial Peptides, AntiBP2
Interface Web user interface
Restrictions to use None
Input data A protein sequence.
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Sneh Lata <>

Additional information


The second version of this web application is available at http://crdd.osdd.net/raghava/antibp2/

Publication for AntiBacterial Peptides

Antibp in publications

 (9)
PMCID: 5829097
PMID: 29527201
DOI: 10.3389/fmicb.2018.00325

[…] these sequences were then run through the cd-hit webserver (huang et al., ) to retain a dataset of 935 sequences with <85% identity (supplementary table ). popular, online algorithms viz., antibp2 (lata et al., ), adam (lee et al., ) and campr3 (waghu et al., ), iamp-2l (xiao et al., ) were used to predict the antimicrobial activity of these peptides. seven of the 935 peptides […]

PMCID: 5304217
PMID: 28205576
DOI: 10.1038/srep42362

[…] in designing the effective antimicrobial agents by identifying the best candidate amp prior to the synthesis and testing against pathogens in wet-lab. in this direction, computational tools like antibp, amper, camp, antibp2, avppred, classamp, iamp-2l and efc-fcbf have been developed for the prediction of amps. the binary (0, 1) and compositional features were used in antibp and antibp2 […]

PMCID: 5215879
PMID: 28056070
DOI: 10.1371/journal.pone.0169582

[…] sequences, the predicted peptide sequences, secondary structure, 3d structure and active sites were analyzed using bioinformation professional analysis websites (http://www.imtech.res.in/raghava/antibp/;http://amp.biosino.org/;http://zhanglab.ccmb.med.umich.edu/i-tasser/output/s90438/)., the dna fragment coding the stomoxynzh1 amino acids (189 bases) was amplified by pcr using the plasmid […]

PMCID: 4352747
PMID: 25802839
DOI: 10.1155/2015/212715

[…] approaches can accelerate the process of antimicrobial drug discovery and design []. many computational methods have been introduced to predict amps based on the different features of amps such as antibp method [], camp methods [], the combination of sequence alignment and the feature selection method [], and the pseudo amino acid composition [, ]., the antibp method had been used to predict […]

PMCID: 4324634
PMID: 25671663
DOI: 10.1371/journal.pone.0117394

[…] criteria are applied to down-select peptides for further testing. in one approach, potential camps are identified from the peptide sequences using web-based prediction tools (camp database, antibp2 and apd2) [–]. in the other approach, prospective camps are selected through rational analysis of the peptide sequences, focusing primarily on size, charge, and sequence similarity […]


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Antibp institution(s)
Institute of Microbial Technology, Chandigarh, India
Antibp funding source(s)
Supported by Council of Scientific and Industrial Research (CSIR) and Department of Biotechnology (DBT), Government of India.

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