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Protocols

Antibp specifications

Information


Unique identifier OMICS_05751
Name Antibp
Alternative names AntiBacterial Peptides, AntiBP2
Interface Web user interface
Restrictions to use None
Input data A protein sequence.
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Sneh Lata

Additional information


The second version of this web application is available at http://crdd.osdd.net/raghava/antibp2/

Publication for AntiBacterial Peptides

Antibp citations

 (17)
library_books

Designing Antibacterial Peptides with Enhanced Killing Kinetics

2018
Front Microbiol
PMCID: 5829097
PMID: 29527201
DOI: 10.3389/fmicb.2018.00325

[…] he family. These sequences were then run through the CD-HIT webserver (Huang et al., ) to retain a dataset of 935 sequences with <85% identity (Supplementary Table ). Popular, online algorithms viz., AntiBp2 (Lata et al., ), ADAM (Lee et al., ) and CAMPR3 (Waghu et al., ), iAMP-2L (Xiao et al., ) were used to predict the antimicrobial activity of these peptides. Seven of the 935 peptides had predi […]

library_books

The rumen microbiome: an underexplored resource for novel antimicrobial discovery

2017
PMCID: 5711939
PMID: 29214045
DOI: 10.1038/s41522-017-0042-1

[…] at various public databases. Specifically, we used the antimicrobial peptide database, the Antimicrobial Sequence Scanning System (AMPA), BACTIBASE, collection of anti-microbial peptides (CAMP),, and antibacterial peptides (AntiBP). Only ORFs that were predicted to encode putative AMPs within at least two of the utilized databases were explored further. The active sites within positive ORFs were p […]

library_books

Myticalins: A Novel Multigenic Family of Linear, Cationic Antimicrobial Peptides from Marine Mussels (Mytilus spp.)

2017
Mar Drugs
PMCID: 5577615
PMID: 28829401
DOI: 10.3390/md15080261

[…] uded CAMPR3 (using the four available prediction algorithms, Random Forests, Discriminant Analysis, Support Vector Machines and Neural Artificial Network) [], the predictor of the DBAASP database [], AntiBP2 [], AMPA [], iAMP-2L [] and ClassAMP (using both the Random Forests and Support Vector Machine algorithms) []. Furthermore, primary sequence homology with other known AMPs was investigated wit […]

call_split

Predicting antimicrobial peptides with improved accuracy by incorporating the compositional, physico chemical and structural features into Chou’s general PseAAC

2017
Sci Rep
PMCID: 5304217
PMID: 28205576
DOI: 10.1038/srep42362
call_split See protocol

[…] To construct the positive dataset, antibacterial, antiviral and antifungal peptide sequences were collected from publicly available databases (or datasets). Specifically, antibacterial peptides were collected from CAMP, APD3 and AntiBP2; antiviral peptides were collected from CAMP, APD3, LAMP and AVPpred; antifungal peptides were collected from CAMP, LAMP and APD3. The […]

library_books

Screening, Expression, Purification and Functional Characterization of Novel Antimicrobial Peptide Genes from Hermetia illucens (L.)

2017
PLoS One
PMCID: 5215879
PMID: 28056070
DOI: 10.1371/journal.pone.0169582

[…] enes sequences, the predicted peptide sequences, secondary structure, 3D structure and active sites were analyzed using bioinformation professional analysis websites (http://www.imtech.res.in/raghava/antibp/;http://amp.biosino.org/;http://zhanglab.ccmb.med.umich.edu/I-TASSER/output/S90438/). […]

library_books

Disparate developmental patterns of immune responses to bacterial and viral infections in fish

2015
Sci Rep
PMCID: 4614352
PMID: 26487553
DOI: 10.1038/srep15458

[…] like serum amyloid A (SAA), complement and the metalloprotease MMP9; several lectins and chemokines also fall into this gene set. Of interest the genes with the highest fold changes are observed for antibacterial peptides such as cathelicidin and hepcidin, and SAA.(2) A larger set of genes (247 genes) are co-modulated in viral and bacterial infection only at FF and/or 3wFF stages (). This set com […]


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Antibp institution(s)
Institute of Microbial Technology, Chandigarh, India
Antibp funding source(s)
Supported by Council of Scientific and Industrial Research (CSIR) and Department of Biotechnology (DBT), Government of India.

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