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AntiJen specifications

Information


Unique identifier OMICS_02863
Name AntiJen
Restrictions to use None
Maintained Yes

Maintainer


  • person_outline EpiJen Team

Publication for AntiJen

AntiJen citations

 (10)
library_books

DRREP: deep ridge regressed epitope predictor

2017
BMC Genomics
PMCID: 5629616
PMID: 28984193
DOI: 10.1186/s12864-017-4024-8

[…] The DRREP pipeline was applied to 5 datasets (SARS, HIV, Pellequer, AntiJen, and SEQ194) composed of long continuous protein sequences, with the AUC and accuracy at 75% specificity shown in Table . In the same table, we also list the AUC scores reported by other epito […]

library_books

An Introduction to B Cell Epitope Mapping and In Silico Epitope Prediction

2016
J Immunol Res
PMCID: 5227168
PMID: 28127568
DOI: 10.1155/2016/6760830

[…] tope prediction methods and constitute platform for development of novel and better algorithms for prediction. The B-cell epitope databases can be classified as multifaceted database such as IEDB and AntiJen, B-cell oriented database such as BciPep, Epitome, and SDAP, and single pathogenic organism oriented database such as the HIV Molecular Immunology Database, FLAVIdB, and Influenza Sequence and […]

library_books

sNebula, a network based algorithm to predict binding between human leukocyte antigens and peptides

2016
Sci Rep
PMCID: 4997263
PMID: 27558848
DOI: 10.1038/srep32115

[…] The workflow of the study is shown in . Qualitative Class I HLA-peptide binding data were collected and curated from four databases: AntiJen, IEDB, MHCBN and SYFPEITHI. A bipartite network of HLA-peptide binding data was then constructed. The binding data network was used to assess the performance of sNebula using leave-one-out (LO […]

library_books

The VHSE Based Prediction of Proteasomal Cleavage Sites

2013
PLoS One
PMCID: 3767653
PMID: 24040264
DOI: 10.1371/journal.pone.0074506

[…] al. suggested that each position near the cleavage site contributes independently to the cleavage signal, and their contributions may be added. In light of these two points, 2607 MHC-I ligands from AntiJen database and 489 in vitro digested data from IEDB database , are employed to construct a sequence-based prediction method. Characterized by VHSE amino acid descriptors , the physicochemical f […]

library_books

Diagnostic Peptide Discovery: Prioritization of Pathogen Diagnostic Markers Using Multiple Features

2012
PLoS One
PMCID: 3522711
PMID: 23272069
DOI: 10.1371/journal.pone.0050748

[…] d humans, which could represent a special subset of all known epitopes. However, current B-cell epitope predictors are trained on epitopes derived from heterogeneous experimental conditions (e.g. the AntiJen dataset ) including many cases in which laboratory animals were immunized with relatively large doses of highly purified antigens. It has been described that humoral responses against the same […]

library_books

Prediction of B cell Linear Epitopes with a Combination of Support Vector Machine Classification and Amino Acid Propensity Identification

2011
PMCID: 3163029
PMID: 21876642
DOI: 10.1155/2011/432830

[…] epitopes from predicted candidates according to their surface distributions. shows an example of the experimentally verified epitopes and predicted epitopes for the 10‚ÄČkDa chaperonin protein in the AntiJen dataset. The yellow spheres in both Figures and show the true and predicted epitope atoms, respectively. The position of the remaining protein is shown in red and blue solid balls in the two […]

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AntiJen institution(s)
Edward Jenner Institute for Vaccine Research, Compton, Berkshire, UK

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