Main logo
?
tutorial arrow
×
Submit new tools
Share tools covering the current topic. Provide easy-to-follow guidelines to improve their usability.
Share new tools with the community
Sign up for free to promote the availability of bioinformatics tools

Antimicrobial peptide databases/repositories | Drug discovery

Antimicrobial peptides (AMPs) are host defense molecules produced by a wide range of organisms including bacteria or protozoa as well as animals, where they are produced by the innate immune system (Cruz et al., 2014). AMPs kill microbes via various…
PhytAMP
Dataset

PhytAMP

Contains valuable information on antimicrobial plant peptides, including…

Contains valuable information on antimicrobial plant peptides, including taxonomic, microbiological and physicochemical data.

APD
Dataset

APD Antimicrobial Peptide Database

Focuses on natural antimicrobial peptides (AMPs) with defined sequence and…

Focuses on natural antimicrobial peptides (AMPs) with defined sequence and activity. APD includes a total of 2619 AMPs with 261 bacteriocins from bacteria, 4 AMPs from archaea, 7 from protists, 13…

CAMP
Dataset

CAMP Collection of Anti-Microbial Peptides

A database of sequences, structures and family-specific signatures of…

A database of sequences, structures and family-specific signatures of prokaryotic and eukaryotic antimicrobial peptides (AMPs). Family-specific sequence signatures comprising of patterns and Hidden…

SATPdb
Dataset

SATPdb

A collection of therapeutically important peptides from different peptide…

A collection of therapeutically important peptides from different peptide databases/datasets. These peptides were curated and classified based on their major function, therapeutic property and…

modlAMP
Desktop

modlAMP MOlecular Design Laboratory’s AntiMicrobial Peptides

Provides functions for calculating a variety of different molecular properties…

Provides functions for calculating a variety of different molecular properties and amino acid residue-based peptide descriptors. ModlAMP is a Python package to ease the discovery and design of novel…

DBAASP
Dataset

DBAASP Database of Antimicrobial Activity and Structure of Peptides

A manually curated database for those peptides for which antimicrobial activity…

A manually curated database for those peptides for which antimicrobial activity against particular targets has been evaluated experimentally. The database is a depository of complete information on:…

ANTISTAPHYBASE
Dataset

ANTISTAPHYBASE

Facilitates the access to important information on antimicrobial peptides…

Facilitates the access to important information on antimicrobial peptides (AMPs) and essential oils (EOs) against Methicillin-resistant S. aureus (MRSA) and Staphylococcus aureus. ANTISTAPHYBASE is a…

BAGEL
Web
Desktop

BAGEL

Identifies putative bacteriocin open reading frames (ORFs) in a DNA sequence…

Identifies putative bacteriocin open reading frames (ORFs) in a DNA sequence using novel, knowledge-based bacteriocin databases and motif databases. BAGEL is a web-based bacteriocin mining tool which…

THPdb
Dataset

THPdb THerapeutic Peptides and Proteins

Provides data of all US- Food and Drug Administration (FDA) approved protein…

Provides data of all US- Food and Drug Administration (FDA) approved protein and peptide therapeutics along with their corresponding drug variants available in the market. THPdb facilitates search of…

MAHMI
Dataset

MAHMI Mechanism of Action of the Human Microbiome

Provides comprehensive information about the sequence of potential…

Provides comprehensive information about the sequence of potential immunomodulatory and antiproliferative peptides encrypted in the proteins produced by the human gut microbiota. MAHMI database…

CS-AMPPred
Desktop

CS-AMPPred

Achieves antimicrobial peptide predictions with enhanced reliability based on…

Achieves antimicrobial peptide predictions with enhanced reliability based on support vector machine (SVM) Light, showing an accuracy of 90% (polynomial model). CS-AMPPred is based on five sequence…

DAMPD
Dataset

DAMPD Dragon Antimicrobial Peptide Database

An update and a replacement of the ANTIMIC database. In DAMPD an integrated…

An update and a replacement of the ANTIMIC database. In DAMPD an integrated interface allows in a simple fashion querying based on taxonomy, species, antimicrobial peptide (AMP) family, citation,…

Defensins…
Dataset

Defensins knowledgebase

A manually curated database and information source focused on the defensin…

A manually curated database and information source focused on the defensin family of antimicrobial peptides.

dPABBs
Web

dPABBs Design Peptides Against Bacterial Biofilms

A web server that facilitates the prediction and design of anti-biofilm…

A web server that facilitates the prediction and design of anti-biofilm peptides, that offer a promising avenue for the development of new standalone therapeutics or adjuvants acting synergistically…

BaAMPs
Dataset

BaAMPs

A database dedicated to antimicrobial peptides (AMPs) specifically tested…

A database dedicated to antimicrobial peptides (AMPs) specifically tested against microbial biofilms. The aim of this project is to provide useful resources for the study of AMPs against biofilms to…

Peptaibol…
Dataset

Peptaibol Database

A sequence and structure resource for the unusual class of peptides known as…

A sequence and structure resource for the unusual class of peptides known as peptaibols. The Peptaibol Database includes sequence, biological source and bibliographical data for the naturally…

DADP
Dataset

DADP

Offers browsing capability for all peptide entries, for signal peptide (SP) and…

Offers browsing capability for all peptide entries, for signal peptide (SP) and for SP classes in particular. DADP is a versatile database for anuran defense peptides that retains all this important…

MilkAMP
Dataset

MilkAMP

Contains valuable information on antimicrobial dairy peptides, including…

Contains valuable information on antimicrobial dairy peptides, including microbiological and physicochemical data.

BACTIBASE
Dataset

BACTIBASE

Stores calculated or predicted physicochemical properties of bacteriocins…

Stores calculated or predicted physicochemical properties of bacteriocins produced by both Gram-positive and Gram-negative bacteria. BACTIBASE is a relational database that aims to serve the research…

Antibp
Web

Antibp

Predicts the antibacterial peptides in a protein sequence.

Predicts the antibacterial peptides in a protein sequence.

YADAMP
Dataset

YADAMP

It is born to facilitate the access to important information on antimicrobial…

It is born to facilitate the access to important information on antimicrobial peptides (AMPs).

ANTIMIC
Dataset

ANTIMIC

A specialized database that has been built with the aim at making a…

A specialized database that has been built with the aim at making a comprehensive repository of natural antimicrobial peptides (AMPs) complemented by data extraction and analysis tools to help…

AMPer
Dataset

AMPer

HMM models for both mature peptides and propeptides were constructed. A total…

HMM models for both mature peptides and propeptides were constructed. A total of 146 models for mature peptides and 40 for propeptides have been developed for individual AMP classes. These were…

PenBase
Dataset

PenBase

Provides comprehensive information about penaeidin properties, diversity and…

Provides comprehensive information about penaeidin properties, diversity and nomenclature. PenBase has been implemented according to the IMGT Scientific chart rules that are based on the…

LAMP
Dataset

LAMP

A database linking AMPs, serves as a tool to aid the discovery and design of…

A database linking AMPs, serves as a tool to aid the discovery and design of AMPs as new antimicrobial agents.

RAPD
Dataset

RAPD Recombinantly-produced Antimicrobial Peptides Database

A database housing information on recombinant approaches to generate suitable…

A database housing information on recombinant approaches to generate suitable amount of antimicrobial peptides for biological and structural studies.

AMPeD
Dataset

AMPeD Antimicrobial peptide editable database

Filters and compiles several existing and heterogeneous protein from several…

Filters and compiles several existing and heterogeneous protein from several existing and heterogeneous protein databases. AMPeD is an annotated collection of antimicrobial peptides that are sourced…

Information

By using OMICtools you acknowledge that you have read and accepted the terms of the end user license agreement.