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ANTs specifications

Information


Unique identifier OMICS_15671
Name ANTs
Alternative name Advanced Normalization Tools
Software type Toolkit/Suite
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages C++
Computer skills Advanced
Stability Stable
Requirements
Insight ToolKit
Maintained Yes

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Documentation


Maintainer


  • person_outline Brian Avants <>

Publication for Advanced Normalization Tools

ANTs in pipeline

2017
PMCID: 5334508
PMID: 28316567
DOI: 10.3389/fnhum.2017.00086

[…] filtering (0.01–0.1) in order to isolate the low-frequency bold fluctuations of interest. structural images were registered to a common stereotaxic space (montreal neurological institute, mni) using advanced normalization tools (avants et al., ). functional image registration was completed using boundary based registration as implemented in fsl (greve and fischl, ). single participant nuisance […]


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ANTs in publications

 (40)
PMCID: 5932175
PMID: 29755401
DOI: 10.3389/fneur.2018.00279

[…] none of the patients showed head motion (translation and rotation about each of the axes) greater than 3 mm during the experiment., functional connectivity mri data were normalized using advanced normalization tools v2.1.0 rc3 [ants ()], following a multistep approach in which we (1) preprocessed the t1-weighted image, (2) calculated the warp parameters from the t1-weighted image […]

PMCID: 5894125
PMID: 29651330
DOI: 10.1186/s13229-018-0210-z

[…] appropriate transform and averaged to create a population atlas representing the average anatomy of the study sample. all registrations were performed with a combination of mni_autoreg tools [] and advanced normalization tools (ants) [, ]. the result of the registration is to have all the scans deformed into alignment with each other in an unbiased fashion. this allows for the analysis […]

PMCID: 5928403
PMID: 29522160
DOI: 10.1093/scan/nsy017

[…] framework for flexibly integrating neuroimaging analysis tools (). the software packages used in this preprocessing pipeline included fmrib software library (fsl v5.0.8; ), freesurfer (v5.3.0; ), advanced normalization tools (ants v2.1.0; ) and nipype’s implementation of artifact detection tools (art; http://www.nitrc.org/projects/artifact_detect/)., simultaneous realignment and slice timing […]

PMCID: 5814381
PMID: 29487791
DOI: 10.1016/j.nicl.2018.02.012

[…] were constructed using components of dcmstack (https://github.com/moloney/dcmstack), analysis of functional neuroimages (afni; ), spm12 v6685 (http://www.fil.ion.ucl.ac.uk/spm/software/spm12/), advanced normalization tools (ants; ), numpy (), scipy () and nibabel (https://github.com/nipy/nibabel), and combined under the nipype framework (). see for a schematic of the processing procedure […]

PMCID: 5802560
PMID: 29317592
DOI: 10.1038/s41398-017-0022-5

[…] from which anatomical rois were derived was non-linearly aligned to the group-wise template. the registration included elastic warping with a point-set based registration metric implemented in the advanced normalization tools (ants) software library. for use in the subsequent statistical analysis, mean values of the diffusion-tensor-derived indices, namely, fractional anisotropy (fa), rd […]


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ANTs institution(s)
Penn Image Computing and Science Laboratory, University of Pennsylvania, Philadelphia, PA, USA
ANTs funding source(s)
This work was supported by Grant R01EB006266-01 and by K01-ES025432-01 from the National Institute Of Biomedical Imaging and Bioengineering and administered through the UCLA Center for Computational Biology.

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