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ANTs specifications

Information


Unique identifier OMICS_15671
Name ANTs
Alternative name Advanced Normalization Tools
Software type Toolkit/Suite
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages C++
Computer skills Advanced
Stability Stable
Requirements
Insight ToolKit
Maintained Yes

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Versioning


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Documentation


Maintainer


  • person_outline Brian Avants

Publication for Advanced Normalization Tools

ANTs citations

 (90)
library_books

Repeated mild traumatic brain injury can cause acute neurologic impairment without overt structural damage in juvenile rats

2018
PLoS One
PMCID: 5940222
PMID: 29738554
DOI: 10.1371/journal.pone.0197187

[…] eneity in T2*-weighted images was corrected by estimating the bias field with N4 Bias Correction [] and template images generated for sham, single and repeated injury cohorts at each time point using Advanced Normalization Tools (ANTs, http://stnava.github.io/ANTs/)[]. The resulting template images were then combined using ANTs into a study-specific template [,] that was segmented into different t […]

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Impulsivity in Parkinson’s Disease Is Associated With Alterations in Affective and Sensorimotor Striatal Networks

2018
PMCID: 5932175
PMID: 29755401
DOI: 10.3389/fneur.2018.00279
call_split See protocol

[…] oftware.htm)]. None of the patients showed head motion (translation and rotation about each of the axes) greater than 3 mm during the experiment.Functional connectivity MRI data were normalized using Advanced Normalization Tools v2.1.0 rc3 [ANTs ()], following a multistep approach in which we (1) preprocessed the T1-weighted image, (2) calculated the warp parameters from the T1-weighted image to a […]

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Analysis of neuroanatomical differences in mice with genetically modified serotonin transporters assessed by structural magnetic resonance imaging

2018
Mol Autism
PMCID: 5894125
PMID: 29651330
DOI: 10.1186/s13229-018-0210-z
call_split See protocol

[…] e appropriate transform and averaged to create a population atlas representing the average anatomy of the study sample. All registrations were performed with a combination of mni_autoreg tools [] and advanced normalization tools (ANTs) [, ]. The result of the registration is to have all the scans deformed into alignment with each other in an unbiased fashion. This allows for the analysis of the de […]

library_books

A Statistically Representative Atlas for Mapping Neuronal Circuits in the Drosophila Adult Brain

2018
Front Neuroinform
PMCID: 5876320
PMID: 29628885
DOI: 10.3389/fninf.2018.00013

[…] Group-wise intensity templates were constructed with the Advanced Normalization Tools (ANTs) software (Avants et al., ), using an algorithm building an average shaped brain that follows a two-step strategy. First, the intensity images of all brains used for […]

library_books

Amygdala–medial prefrontal cortex connectivity relates to stress and mental health in early childhood

2018
PMCID: 5928403
PMID: 29522160
DOI: 10.1093/scan/nsy017

[…] sed framework for flexibly integrating neuroimaging analysis tools (). The software packages used in this preprocessing pipeline included FMRIB Software Library (FSL v5.0.8; ), FreeSurfer (v5.3.0; ), Advanced Normalization Tools (ANTs v2.1.0; ) and Nipype’s implementation of Artifact Detection Tools (ART; http://www.nitrc.org/projects/artifact_detect/).Simultaneous realignment and slice timing cor […]

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Focusing on the Differences of Resting State Brain Networks, Using a Data Driven Approach to Explore the Functional Neuroimaging Characteristics of Extraversion Trait

2018
Front Neurosci
PMCID: 5844978
PMID: 29556171
DOI: 10.3389/fnins.2018.00109
call_split See protocol

[…] d Xing, ), and submitted into the recon-all routine in FreeSurfer 5.1 to extract the brain tissues, (2) all individual anatomical brain images were transformed into the MNI152 standard space by using Advanced Normalization Tools (ANTs, http://stnava.github.io/ANTs/) (Avants and Gee, ). […]

Citations

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ANTs institution(s)
Penn Image Computing and Science Laboratory, University of Pennsylvania, Philadelphia, PA, USA
ANTs funding source(s)
This work was supported by Grant R01EB006266-01 and by K01-ES025432-01 from the National Institute Of Biomedical Imaging and Bioengineering and administered through the UCLA Center for Computational Biology.

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