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apComplex specifications

Information


Unique identifier OMICS_14605
Name apComplex
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 3.0
Computer skills Advanced
Version 2.46.0
Stability Stable
Requirements
stats, R(>=2.10), graph, RBGL, Rgraphviz, org.Sc.sgd.db
Maintained Yes

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Documentation


Maintainer


  • person_outline Denise Scholtens

Publication for apComplex

apComplex citations

 (2)
library_books

Towards a Hierarchical Strategy to Explore Multi Scale IP/MS Data for Protein Complexes

2015
PLoS One
PMCID: 4598013
PMID: 26448546
DOI: 10.1371/journal.pone.0139704

[…] levels of the protein complexes in a given dataset. our method is available as gnu-r source code and includes examples at www.bdagroup.nl., the yeast ip/ms datasets are part of the r-package apcomplex from bioconductor (http://www.bioconductor.org/packages/release/bioc/html/apcomplex.html), the human ip/ms dataset is available on http://epicome.org/index.php/downloads. our method […]

library_books

Graphs in molecular biology

2007
BMC Bioinformatics
PMCID: 1995545
PMID: 17903289
DOI: 10.1186/1471-2105-8-S6-S8

[…] for graph algorithms. package rgraphviz provides graph visualization. software developers may use these packages to construct tools aimed at specific applications areas, such as the gostats or apcomplex packages., the graph package is entirely a creation of the bioconductor core. the package rbgl is an interface to the boost graph library [], a c++ library devoted to portable […]


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apComplex institution(s)
Department of Biostatistics, Harvard School of Public Health Boston, MA, USA; Center for Cancer Systems Biology and Department of Cancer Biology, Dana-Farber Cancer Institute, Harvard Medical School Boston, MA, USA; Department of Genetics, Harvard Medical School Boston, MA, USA; Program in Computational Biology, Division of Public Health Sciences, Fred Hutchinson Cancer Research Center Seattle, WA, USA

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