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AphanoDB | Genomic data : DNA sequence databases

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Compiles information about Aphanomyces sequences and their annotations. AphanoDB aims to simplify gene prediction and annotation for the whole genome sequencing of Saprolegniales species. The database provides over 18000 assembled and annotated expression sequence tags (ESTs) that can be used for functional and comparative genomic studies. Searches can be made by text searches or BLAST analysis or, for a given sequence, by accession number, EST name or gene ID.

AphanoDB specifications

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Information

Unique identifier	OMICS_25353
Restrictions to use	None
Database management system	MySQL
Community driven	No
Data access	File download, Browse
User data submission	Not allowed
Version	2.0
Registration required	Yes
Maintained	Yes

Taxon

Protists

Maintainers

Patrick Wincker <>
Bernard Dumas <>
Mohammed-Amine Madoui <>
Elodie Gaulin <>
Catherine Mathé <>

AphanoDB article

AphanoDB: a genomic resource for Aphanomyces pathogens.

2007 BMC Genomics

PMID: 18096036

DOI: 10.1186/1471-2164-8-471

AphanoDB institution(s)

UMR 5546 CNRS, Universite Paul Sabatier Toulouse III, Auzeville Castanet-Tolosan, France; UMR 8030 Genoscope – CNRS, Evry, France

AphanoDB funding source(s)

Supported in part by the FP6 Grain Legume Integrated Project and a pre-doctoral scholarship from the CNRS.

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