ApicoAlign specifications

Information


Unique identifier OMICS_22634
Name ApicoAlign
Interface Web user interface
Restrictions to use None
Input data Some protein sequences.
Input format FASTA
Programming languages Javascript, Perl
Computer skills Basic
Stability No
Maintained No

Maintainer


This tool is not available anymore.

Publication for ApicoAlign

ApicoAlign citation

library_books

The parasite specific substitution matrices improve the annotation of apicomplexan proteins

2012
BMC Genomics
PMCID: 3521392
PMID: 23281791
DOI: 10.1186/1471-2164-13-S7-S19

[…] The pairwise alignments using BLOSUM62 and PfFSmat60 matrices were carried out using ApicoAlign web server (http://www.cdfd.org.in/apicoalign/) developed by us. The blastp program of standalone BLAST software was used for carrying out local BLAST searches [] (ftp://ftp.ncbi.nih.gov/to […]

ApicoAlign institution(s)
Computational and Functional Genomics Group, Centre for DNA Fingerprinting and Diagnostics, A Sun Centre of Excellence in Medical Bioinformatics, Hyderabad, India
ApicoAlign funding source(s)
Supported by CSIR-NMITLI and DBT; CSIR fellowship; UGC fellowship.

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