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APID specifications

Information


Unique identifier OMICS_02864
Name APID
Alternative name Agile Protein Interaction DataAnalyzer
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Subtool


  • APID2NET

Publications for Agile Protein Interaction DataAnalyzer

APID in publications

 (22)
PMCID: 5722940
PMID: 29222529
DOI: 10.1038/s41598-017-17633-2

[…] of these template plants was obtained from phytozome v9 and uniprot databases, and the protein interaction information was collected from seven databases; intact, mint, atpin, atpid, pair, apid, and prin (fig. ). to find protein orthologs in cassava, we performed blastp search against the cassava genome sequence. the cassava orthologous proteins were identified if the identity […]

PMCID: 5339786
PMID: 28266596
DOI: 10.1038/srep44017

[…] in conjunction with lasp-1., to investigate the proteins that interact with lasp-1, the information of target human proteins was retrieved from different public databases, including intact, biogrid, apid, pina2.0, mentha, hitpredict, wiki-pi, pips, ppi-finder and preppi or from the studies reported in pubmed. a total of 390 predicted or experimentally validated lasp-1 interacting proteins […]

PMCID: 4858940
PMID: 26889046
DOI: 10.1074/mcp.M115.053603

[…] interaction data for building an initial network. the interaction data were downloaded from databases of the interactome browser mentha (1012 records), the complex portal intact (584 records), the agile protein interaction dataanalyzer (apid) (524 records), the database of interacting proteins (dip) (456 records), the automatic molecular interaction predictions interoporc (132 records), […]

PMCID: 4812414
PMID: 26784240
DOI: 10.3390/membranes6010008

[…] databases: biogrid [] (version 3.4.129, consulted 12 october 2015), intact [] (version 4.1.8, consulted 13 october 2015), mentha [] (version of 13 october 2015i2d [] (version of 13 october 2015), apid[] (version of 13 october 2015), hippie [] (version of 13 october 2015), ncbi [] (version of 13 october 2015). additionally, the psicquic web service [] (version 1.4.5, consulted 14 october 2015) […]

PMCID: 5410230
PMID: 26517684
DOI: 10.18632/oncotarget.5633

[…] extending effect, in order to pursue the development of this scaffold as a potential gbm and cns therapeutic., as the first step in our analyses, we selected tfs that bind to e2a isoforms using the apid program []. the sequences of the selected tfs were aligned with the program clustal w 2.1 []. the next step involved preparing a homology model of olig2 and its heterodimer with e47, using […]


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APID institution(s)
Bioinformatics and Functional Genomics Research Group, Cancer Research Center (CIC, CSIC/USAL), Salamanca, Spain

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