ApiDots

[…] r strand) in which to search for unannotated genes, the entire reference T. gondii genome was filtered to identify:(i) Unannotated sequences that map to consensus sequences derived by EST clustering (ApiDoTS clusters []) containing at least 3 ESTs, yielding 1,189 regions.(ii) Unannotated ORFs with significant BLASTX hits to the non-redundant GenBank database [], yielding 1,943 intergenic ORFs (≥15 […]

[…] e nine SAGE libraries. Dynamic links within the page connect the individual to the position of each tag within the Toxoplasma chromosome maps [] or within the assembled genomic contigs and linkage to ApiDots [] via tag sequence cross-connects SAGE tags to the Toxoplasma EST collection. Each tag in the results page is linked to other possible positions in the Toxoplasma genome (the initial 2 × 2 ch […]