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[email protected] specifications


Unique identifier OMICS_12893
Name [email protected]
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Input data [email protected] can read a GROMACS trajectory file, a PDB coordinate file, and a GROMACS index file.
Output data It creates a two-dimensional geometric representation of a bilayer.
Operating system Unix/Linux, Mac OS
Programming languages C++
License GNU General Public License version 3.0
Computer skills Medium
Stability Stable
Maintained No


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Publication for [email protected]


Membrane simulation analysis using Voronoi tessellation

J Cheminform
PMCID: 3980144
PMID: 24765122
DOI: 10.1186/1758-2946-6-S1-O23

[…] the calculation of the bilayer thickness or area per lipid is directly accessible. for lipid mixtures, e.g. with cholesterol or embedded proteins, this is no longer the case. to face this challenge, [email protected] has been developed []. the open-source and freely available graphical application is able to handle united-atom and coarse-grained trajectories generated with gromacs []. instructive, […]

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[email protected] institution(s)
Bio-Medical Informatics Department, University of Bielefeld, Bielefeld, Germany; Applied Bioinformatics Group, University of Tubingen, Tubingen, Germany

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