aPPRove specifications

Information


Unique identifier OMICS_09310
Name aPPRove
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
License GNU General Public License version 2.0
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


No version available

Information


Unique identifier OMICS_09310
Name aPPRove
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Publication for aPPRove

aPPRove citations

 (2)
library_books

aPPRove: An HMM Based Method for Accurate Prediction of RNA Pentatricopeptide Repeat Protein Binding Events

2016
PLoS One
PMCID: 4999063
PMID: 27560805
DOI: 10.1371/journal.pone.0160645

[…] erile plants are used to generate hybrid seed, which commercial agriculture heavily relies on for higher yield, and hence, highlights the interest of this class of proteins. Our method, which we call aPPRove, builds upon the recent work of Barkan et al. [] that determines sequence-specific binding rules for PPR proteins.The primary structure of many RNA-binding proteins—including PPR proteins—is c […]

library_books

Distinct role of Arabidopsis mitochondrial P type pentatricopeptide repeat protein modulating editing protein, PPME, in nad1 RNA editing

2016
RNA Biol
PMCID: 4962808
PMID: 27149614
DOI: 10.1080/15476286.2016.1184384

[…] e tool, TPRpred (http://toolkit.tuebingen.mpg.de/tprpred), revealed that PPME had 17 PPR motifs, and a less commonly predicted combination code for PPME binding was obtained (Fig. S3B). Additionally, aPPRove software (http://www.cs.colostate.edu/cstop/index.php) was used to analyze the conserved combination code for PPME, but none was detected. The current known PPR combination code might not be s […]

aPPRove institution(s)
Australian Research Council Centre of Excellence in Plant Energy Biology, University of Western Australia, Crawley, WA, Australia

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