APSSP2

[…] /ml prior to analysis. Four scans were conducted and averaged, and the α-helical content was calculated using the molar ellipticity at 222 nm (). Percentage of helical content was estimated using the Advanced Protein Secondary Structure Prediction Server for protein secondary structure prediction (www.imtech.res.in/raghava/apssp/). […]

[…] al., ; Hatzopoulos et al., ; Zheng et al., ). The secondary structure prediction obtained with Jpred4 was cross-checked using the programs PSSpred (Yan et al., ), SOPMA (Geourjon and Deleage, ), and APSSP2 (Raghava, ); comparable results were obtained in all the cases (data not shown).Atomic models for the different domains of HsCPAP897−1338 were obtained using I-TASSER (Figure and Supplementary […]

[…] APSSP2 was used for the secondary structure prediction of each protein from their aa sequence . The algorithm uses a sequence of amino acids as a query input and predicts the corresponding secondary s […]

[…] prediction according to the critical assessment of protein structure prediction (CASP) at http://predictioncenter.org. These programs included GOR4 (http://npsa-pbil.ibcp.fr/cgi-bin/secpred_gor4.pl), APSSP2 (http://www.imtech.res.in/raghava/apssp2/), SCRATCH (SSpro v. 4.5) (http://scratch.proteomics.ics.uci.edu), JPred (Jnet) (http://www.compbio.dundee.ac.uk/www-jpred/), and PSIpred (http://bioinf […]

[…] construct was predicted by the centroidfold program[] and was compared before and after gene optimization. The prediction of the secondary structure of the recombinant protein was performed using the Advanced Protein Secondary Structure Prediction Server 2 (http://www.imtech.res.in/raghava/apssp2/) and GOR-IV.[] For prediction of 3D structure of each selected segment and the complete designed cons […]

[…] protein from T. gondii was obtained from Genbank with the accession number of ADT65352. Secondary structure prediction was performed by four web-based programs namely Jpred [], PORTER [], Prof [] and APSSP2 []. […]