APSSP2 statistics

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Citations per year

Number of citations per year for the bioinformatics software tool APSSP2
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Tool usage distribution map

This map represents all the scientific publications referring to APSSP2 per scientific context
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Protocols

APSSP2 specifications

Information


Unique identifier OMICS_06637
Name APSSP2
Alternative name Advanced Protein Secondary Structure Prediction
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


No version available

Information


Unique identifier OMICS_06637
Name APSSP2
Alternative name Advanced Protein Secondary Structure Prediction
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

APSSP2 citations

 (11)
library_books

In vitro reconstitution of interactions in the CARD9 signalosome

2017
PMCID: 5646969
PMID: 28765954
DOI: 10.3892/mmr.2017.7116

[…] /ml prior to analysis. Four scans were conducted and averaged, and the α-helical content was calculated using the molar ellipticity at 222 nm (). Percentage of helical content was estimated using the Advanced Protein Secondary Structure Prediction Server for protein secondary structure prediction (www.imtech.res.in/raghava/apssp/). […]

library_books

Electron Microscopy Structural Insights into CPAP Oligomeric Behavior: A Plausible Assembly Process of a Supramolecular Scaffold of the Centrosome

2017
Front Mol Biosci
PMCID: 5366329
PMID: 28396859
DOI: 10.3389/fmolb.2017.00017

[…] al., ; Hatzopoulos et al., ; Zheng et al., ). The secondary structure prediction obtained with Jpred4 was cross-checked using the programs PSSpred (Yan et al., ), SOPMA (Geourjon and Deleage, ), and APSSP2 (Raghava, ); comparable results were obtained in all the cases (data not shown).Atomic models for the different domains of HsCPAP897−1338 were obtained using I-TASSER (Figure and Supplementary […]

call_split

Sequence Complexity of Amyloidogenic Regions in Intrinsically Disordered Human Proteins

2014
PLoS One
PMCID: 3940659
PMID: 24594841
DOI: 10.1371/journal.pone.0089781
call_split See protocol

[…] APSSP2 was used for the secondary structure prediction of each protein from their aa sequence . The algorithm uses a sequence of amino acids as a query input and predicts the corresponding secondary s […]

call_split

Partially Disordered Structure in Intravirus Coat Protein of Potyvirus Potato Virus A

2013
PLoS One
PMCID: 3700898
PMID: 23844104
DOI: 10.1371/journal.pone.0067830
call_split See protocol

[…] prediction according to the critical assessment of protein structure prediction (CASP) at http://predictioncenter.org. These programs included GOR4 (http://npsa-pbil.ibcp.fr/cgi-bin/secpred_gor4.pl), APSSP2 (http://www.imtech.res.in/raghava/apssp2/), SCRATCH (SSpro v. 4.5) (http://scratch.proteomics.ics.uci.edu), JPred (Jnet) (http://www.compbio.dundee.ac.uk/www-jpred/), and PSIpred (http://bioinf […]

library_books

In silico experiment with an antigen toll like receptor 5 agonist fusion construct for immunogenic application to Helicobacter pylori

2013
PMCID: 3722629
PMID: 23901192
DOI: 10.4103/0971-6866.112885

[…] e optimization. The prediction of the secondary structure of the recombinant protein was performed using the Advanced Protein Secondary Structure Prediction Server 2 (http://www.imtech.res.in/raghava/apssp2/) and GOR-IV.[] For prediction of 3D structure of each selected segment and the complete designed construct, several ab-initio online programs such as 3Dpro http://scratch.proteomics.ics.uci.ed […]

call_split

Theoretical investigation on structural, functional and epitope of a 12 kDa excretory secretory protein from Toxoplasma gondii

2012
BMC Struct Biol
PMCID: 3542155
PMID: 23181504
DOI: 10.1186/1472-6807-12-30
call_split See protocol

[…] protein from T. gondii was obtained from Genbank with the accession number of ADT65352. Secondary structure prediction was performed by four web-based programs namely Jpred [], PORTER [], Prof [] and APSSP2 []. […]


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