APSSP2 statistics

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APSSP2 specifications

Information


Unique identifier OMICS_06637
Name APSSP2
Alternative name Advanced Protein Secondary Structure Prediction
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

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Information


Unique identifier OMICS_06637
Name APSSP2
Alternative name Advanced Protein Secondary Structure Prediction
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

APSSP2 in publications

 (10)
PMCID: 5646969
PMID: 28765954
DOI: 10.3892/mmr.2017.7116

[…] prior to analysis. four scans were conducted and averaged, and the α-helical content was calculated using the molar ellipticity at 222 nm (). percentage of helical content was estimated using the advanced protein secondary structure prediction server for protein secondary structure prediction (www.imtech.res.in/raghava/apssp/)., purified cards from card9 and bcl10 were incubated together […]

PMCID: 3940659
PMID: 24594841
DOI: 10.1371/journal.pone.0089781

[…] aspects of protein residues to identify ar , , , . computation tool smart is used to predict the sequence complexity parameters. we have measured the structural propensity of the residues in ar by apssp2 algorithm which is freely available in the world wide web , ., disprot database release 5.6 (http://www.disprot.org/) provides a set of proteins with different degree of disorderness . […]

PMCID: 3700898
PMID: 23844104
DOI: 10.1371/journal.pone.0067830

[…] according to the critical assessment of protein structure prediction (casp) at http://predictioncenter.org. these programs included gor4 (http://npsa-pbil.ibcp.fr/cgi-bin/secpred_gor4.pl), apssp2 (http://www.imtech.res.in/raghava/apssp2/), scratch (sspro v. 4.5) (http://scratch.proteomics.ics.uci.edu), jpred (jnet) (http://www.compbio.dundee.ac.uk/www-jpred/), and psipred […]

PMCID: 3722629
PMID: 23901192
DOI: 10.4103/0971-6866.112885

[…] was predicted by the centroidfold program[] and was compared before and after gene optimization. the prediction of the secondary structure of the recombinant protein was performed using the advanced protein secondary structure prediction server 2 (http://www.imtech.res.in/raghava/apssp2/) and gor-iv.[] for prediction of 3d structure of each selected segment and the complete designed […]

PMCID: 3542155
PMID: 23181504
DOI: 10.1186/1472-6807-12-30

[…] from t. gondii was obtained from genbank with the accession number of adt65352. secondary structure prediction was performed by four web-based programs namely jpred [], porter [], prof [] and apssp2 []., the sequence of the es protein was used for basic local alignment search tool (blast) [] against non-redundant (nr) protein database to identify the protein class family. blast was also […]


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