APT pipeline

APT specifications


Unique identifier OMICS_05204
Name APT
Alternative name Affymetrix Power Tools
Software type Package/Module
Interface Command line interface
Restrictions to use None
Biological technology Affymetrix
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes


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APT citations

PMCID: 3877356

[…] (ottawa, ontario, canada) using genechip mouse exon 1.0 st array (affymetrix, santa clara, ca, usa). microarray gene expression data were analyzed by flexarray1.6.1 after normalization using affymetrix power tools (aft) [25]. genes were considered as up or down regulated relative to mock infected cells if they were ≤1 or ≥1 log2 fold different (≤ or ≥2 fold differences) expression level […]

PMCID: 2907348

[…] this platform is not able to directly manage the affymetrix cel files, so the user has to perform some steps manually employing external tools such as the affymetrix expression console [2] or the affymetrix power tools [2], or third part software such as rmaexpress [11]. the process starts with the summarization phase, i.e. converting images into numerical data. this phase combines multiple […]

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