Aptaligner specifications

Unique identifier:
OMICS_13591
Interface:
Graphical user interface
Input data:
NGS data, number of projects, project name, library design file
Output data:
Alignments performed using a Markov model, alignment scores, calculated statistics
Programming languages:
C, Python, R
Computer skills:
Medium
Requirements:
xlrd, argeparse, openpyxl, BioPython, R::MiscPsycho, stringr, dendroextras, statmod, numpy, C
Software type:
Package/Module
Restrictions to use:
None
Input format:
FASTQ, CSV
Operating system:
Unix/Linux
License:
Other
Maintained:
No

versioning

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Aptaligner support

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This tool is not available anymore.

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Publications

Institution(s)

UTHealth Bioinformatics Service Center, University of Texas Health Science Center, Houston, TX, USA; Center for Clinical and Translational Sciences, University of Texas Health Science Center, Houston, TX, USA; School of Biomedical Informatics, University of Texas Health Science Center, Houston, TX, USA; Brown Foundation Institute of Molecular Medicine for the Prevention of Human Diseases, University of Texas Health Science Center, Houston, TX, USA; Department of Nanomedicine and Biomedical Engineering, University of Texas Health Science Center, Houston, TX, USA; School of Medicine, University of Texas Health Science Center, Houston, TX, USA; Department of Integrated Biology and Pharmacology, University of Texas Health Science Center, Houston, TX, USA

Funding source(s)

This work was supported by NIH/NCATS (UL1 TR000371), NCI (CA151668), Welch Foundation (AU-1296), NIAID (HHSN272200800048C and AI054827), and NHLBI (HHSN268201000037C) grants.

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