AptaTools specifications

Information


Unique identifier OMICS_09204
Name AptaTools
Software type Pipeline/Workflow
Interface Command line interface, Graphical user interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


No version available

Maintainer


  • person_outline Pawel F. Przytycki

Publications for AptaTools

AptaTools citations

 (2)
library_books

Aptamer Cell Based Selection: Overview and Advances

2017
PMCID: 5618307
PMID: 28805744
DOI: 10.3390/biomedicines5030049

[…] ny researchers. In this regard, a powerful tool comes from Hoinka et al. []. They developed a new open-source platform (referred as AptaGUI) for the dynamic visualization of HT-SELEX data by applying AptaTools package []. AptaTools includes algorithms for HTS data preprocessing and allows tracking of the changes of individual aptamers and clusters, to perform structure-based analysis and identify […]

library_books

Opportunities in the design and application of RNA for gene expression control

2016
Nucleic Acids Res
PMCID: 4838379
PMID: 26969733
DOI: 10.1093/nar/gkw151

[…] nables facile comparison of populations for sequence distribution, generation of sequence family clusters and calculation of sequence enrichment throughout the course of a selection (). Additionally, AptaTools is a set of computational tools developed for data processing, tracking changes in aptamer families throughout selection cycles and identifying sequence-structure motifs. These tools have al […]

AptaTools institution(s)
National Center of Biotechnology Information, National Library of Medicine, NIH, Bethesda, MD, USA; Department of Microbiology & Immunology, University of Miami Miller School of Medicine, Miami, FL, USA; Laboratory of Hemostasis, Division of Hematology, Center for Biologics Evaluation and Research, Food and Drug Administration, Silver Spring, MD, USA

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