AptaTRACE specifications

Information


Unique identifier OMICS_11497
Name AptaTRACE
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data AptaTRACE takes as input the sequencing results from all, or a subset of selection cycles from an HT-SELEX experiment.
Output data It outputs a list of position specific weight matrices (PWMs) along with a visual representation of the motifs structural context shift throughout the selection.
Operating system Unix/Linux
Programming languages C++, Java
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


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Maintainer


  • person_outline Pawel F. Przytycki <>

Publication for AptaTRACE

AptaTRACE institution(s)
National Center of Biotechnology Information, National Library of Medicine, NIH, Bethesda MD, USA; Department of Molecular and Cellular Biology, Beckman Research Institute of City of Hope, CA, USA; Bioinformatics Group, Department of Computer Science, University of Freiburg, Freiburg, Germany

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