Arabidopsis eFP Browser pipeline

Arabidopsis eFP Browser specifications

Information


Unique identifier OMICS_22410
Name Arabidopsis eFP Browser
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Subtool


  • Arabidopsis Seed Coat eFP Browser

Maintainer


  • person_outline Nicholas J. Provart <>

Additional information


http://bar.utoronto.ca/efp_seedcoat/cgi-bin/efpWeb.cgi

Publication for Arabidopsis eFP Browser

Arabidopsis eFP Browser IN pipelines

 (3)
2015
PMCID: 4431829
PMID: 25974423
DOI: 10.1371/journal.pone.0125624

[…] with data from publicly available expression databases (s5 fig). transcriptomics analysis using genecat (http://genecat.mpg.de) [47], genevestigator (http://www.genevestigator.com/gv/) [48] and the arabidopsis efp browser (http://bar.utoronto.ca/efp/cgi-bin/efpweb.cgi) [49] indicate both genes are widely expressed with galt5 having a higher overall expression compared to galt2. it is also […]

2015
PMCID: 4469908
PMID: 25997736
DOI: 10.14348/molcells.2015.2323

[…] process (go:0009555)” were highly represented (p value = 1.30e–11), which included 32 genes (table 1 and supplementary table s4). the expression patterns of these 32 genes were reconstructed using arabidopsis efp browser (http://bar.utoronto.ca/efp/cgi-bin/efpweb.cgi) (winter et al., 2007) (fig. 5a). all of these genes, as well as askβ, were highly expressed in tricellular and mature stage […]

2013
PMCID: 3797442
PMID: 24137171
DOI: 10.3389/fpls.2013.00406

[…] are expressed at low levels in siliques and mature leaves, while attcp22 is not detected in inflorescences and mature leaves (figure 2a). expression data from genevestigator (hruz et al., 2008), the arabidopsis efp browser at bar (winter et al., 2007), atgenexpress (schmid et al., 2005), and genecat (mutwil et al., 2008) supports our rt-pcr analysis for attcp8, attcp14, attcp15, attcp21, […]

Arabidopsis eFP Browser institution(s)
Department of Cell and Systems Biology, University of Toronto, Toronto, ON, Canada; Department of Computer Science, University of Toronto, Toronto, ON, Canada
Arabidopsis eFP Browser funding source(s)
Supported in part by grants from Genome Canada and NSERC, the Natural Sciences and Engineering Research Council of Canada (NSERC).

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