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Arabidopsis Subcellular localization Predictor AtSubP

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Localizes gene products at the subcellular level will substantially advance Arabidopsis gene annotation. AtSubP is based on the combinatorial presence of diverse protein features, such as its amino acid composition, sequence-order effects, terminal information, Position-Specific Scoring Matrix, and similarity search-based Position-Specific Iterated-Basic Local Alignment Search Tool information. AtSubP outperformed all the existing tools currently being used for Arabidopsis proteome annotation.

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AtSubP classification

  • Plants
    • Arabidopsis thaliana

AtSubP specifications

Interface:
Web user interface
Input format:
FASTA
Stability:
Stable
Restrictions to use:
None
Computer skills:
Basic
Maintained:
Yes

AtSubP support

Documentation

Maintainer

  • Patrick Zhao <>

Credits

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Publications

Institution(s)

Bioinformatics Laboratory, Plant Biology Division, Samuel Roberts Noble Foundation, Ardmore, OK, USA; Centre for Biocrystallography, Institute of Bioorganic Chemistry, Polish Academy of Sciences, Poznan, Poland

Funding source(s)

This work was supported by the Samuel Roberts Noble Foundation.

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