AtRTD_translation_pipeline specifications


Unique identifier OMICS_18778
Name Arabidopsis Thaliana Reference Transcript Dataset translation pipeline
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input format FASTA
Operating system Unix/Linux
Programming languages Python
License MIT License
Computer skills Advanced
Stability Stable
Requirements Biopython
Maintained Yes



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  • person_outline John Brown <>
  • person_outline Maria Kalyna <>

AtRTD_translation_pipeline article

AtRTD_translation_pipeline institution(s)
Informatics and Computational Sciences, The James Hutton Institute, Invergowrie, Dundee, UK; Plant Sciences Division, College of Life Sciences, University of Dundee, Invergowrie, Dundee, UK; Max F. Perutz Laboratories, Medical University of Vienna, Vienna, Austria; The Donnelly Centre, University of Toronto, Toronto, ON, Canada; Cell and Molecular Sciences, The James Hutton Institute, Invergowrie, Dundee, UK; Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dundee, UK; Institute of Plant Sciences Paris Saclay, INRA-CNRS-UEVE, Orsay, France; Institute of Molecular, Cell and Systems Biology, College of Medical, Veterinary and Life Sciences, University of Glasgow, Glasgow, UK; Department of Applied Genetics and Cell Biology, University of Natural Resources and Life Sciences - BOKU, Vienna, Austria
AtRTD_translation_pipeline funding source(s)
Biotechnology and Biological Sciences Research Council (BBSRC) [BB/K013661/1 and BB/K006568/1; BB/K006835/1]; Scottish Government Rural and Environment Science and Analytical Services division (RESAS); Austrian Science Fund (FWF) [P26333, DK W1207]; LABEX Saclay Plant Sciences; BBSRC EASTBIO PhD studentships; European Alternative Splicing Network of Excellence (EURASNET) [LSHG-CT-2005- 518238] for catalyzing important collaborations.

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