Provides a literature-derived transcriptional regulatory map for Arabidopsis. ATRM is a web application that reveals the heterogeneity of developmental and stress response subnetworks and the wiring preference of novel transcription factors (TFs) in transcriptional regulatory systems. It was evaluated by comparing the proportion of regulatory pairs co-existing in the same biological process.
State Key Laboratory of Protein and Plant Gene Research, College of Life Sciences, Center for Bioinformatics, Peking University, Beijing, China; Monsanto Biotechnology R&D Center, Beijing, China; State Key Laboratory of Systematic and Evolutionary Botany, Institute of Botany, Chinese Academy of Sciences, Beijing, China
ATRM funding source(s)
Supported by the National Natural Science Foundation of China (31470330), China 863 Programs (2006AA02Z334), the State Key Laboratory of Protein and Plant Gene Research, the National Program for Support of Top-notch Young Professionals and a China Postdoctoral Science Foundation Grant (2014M560017).