ARACHNE pipeline

ARACHNE specifications

Information


Unique identifier OMICS_01812
Name ARACHNE
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages C++
Computer skills Advanced
Stability Stable
Maintained Yes

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Publications for ARACHNE

ARACHNE IN pipeline

2012
PMCID: 3419625
PMID: 22554261
DOI: 10.1186/1756-0500-5-213

[…] two available gene predictions of the grapevine genome were produced from an 8x coverage assembly and from a 12x coverage assembly that included the genomic data from the 8x coverage version with arachne [16]. gaze software was used to perform the gene predictions for the 8x and the first version of the 12x (v0) prediction. the complete procedure is available in chapter 5 of the supplementary […]

ARACHNE institution(s)
Laboratory for Computer Science, Massachusetts Institute of Technology, Cambridge, MA, USA; Whitehead Institute/MIT Center for Genome Research, Cambridge, MA, USA; Department of Mathematics and Statistics, University of Nebraska, Lincoln, NE, USA; Department of Mathematics, Massachusetts Institute of Technology, Cambridge, MA, USA; Department of Biology, Massachusetts Institute of Technology, Cambridge, MA, USA

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