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Protocols

ArachnoServer specifications

Information


Unique identifier OMICS_03117
Name ArachnoServer
Restrictions to use None
Community driven No
Data access Browse
User data submission Not allowed
Version 3.0
Maintained Yes
Wikipedia https://en.wikipedia.org/wiki/ArachnoServer

Maintainer


  • person_outline ArachnoServer Team

Publications for ArachnoServer

ArachnoServer citations

 (10)
library_books

Spider Neurotoxins, Short Linear Cationic Peptides and Venom Protein Classification Improved by an Automated Competition between Exhaustive Profile HMM Classifiers

2017
Toxins
PMCID: 5577579
PMID: 28786958
DOI: 10.3390/toxins9080245

[…] ct of UniProt [], represent with Arachnoserver [] the main repositories of spider venom-derived sequences. ToxProt contains 1379 manually-reviewed entries (status as of 20 April 2017). In contrast to ArachnoServer, which completely relies on a rational naming system [] and, therefore, sort sequences according to spider taxonomic families, UniProtKB includes a peptide family classification annotati […]

library_books

Venom Gland Transcriptomic and Proteomic Analyses of the Enigmatic Scorpion Superstitionia donensis (Scorpiones: Superstitioniidae), with Insights on the Evolution of Its Venom Components

2016
Toxins
PMCID: 5198561
PMID: 27941686
DOI: 10.3390/toxins8120367

[…] Motif Alignment & Search Tool (MAST) to determine whether the selected motif was a unique signature or not.The prediction of the signal peptide, propeptide and mature peptide was performed using the ArachnoServer (http://www.arachnoserver.org/spiderP.html); SignalP 4.1 Server (http://www.cbs.dtu.dk/services/SignalP/), and ProP 1.0 Server (http://www.cbs.dtu.dk/services/ProP/). […]

library_books

Characterization of Three Venom Peptides from the Spitting Spider Scytodes thoracica

2016
PLoS One
PMCID: 4881942
PMID: 27227898
DOI: 10.1371/journal.pone.0156291

[…] ng mass spectrometry confirmed that U5-Sth1a (as well as a paralog of U3-Sth1a and U3-Sth1h) is present in crude Scytodes thoracica venom.We used BLASTp [] to search for mature toxin sequences in the ArachnoServer database [] that align closely with the mature toxin sequences for U3-Sth1a, U3-Sth1h, and U5-Sth1a. Except for other sequences from Scytodes thoracica, no sequences matched U3-Sth1a or […]

call_split

Partial Characterization of Venom from the Colombian Spider Phoneutria Boliviensis (Aranae:Ctenidae)

2015
Toxins
PMCID: 4549730
PMID: 26264023
DOI: 10.3390/toxins7082872
call_split See protocol

[…] e NCBInr protein databases, with carbamidomethylation as fixed modification. Peptide sequences were searched for similarity using BLAST (http://blast.ncbi.nlm.nih.gov/Blast.cgi?PAGE=Proteins) and the Arachnoserver database [,] (http://www.arachnoserver.org/mainMenu.html), and aligned with related arachnid peptides using ClustalW []. […]

library_books

Bioinformatics Aided Venomics

2015
Toxins
PMCID: 4488696
PMID: 26110505
DOI: 10.3390/toxins7062159

[…] e of furin-like cleavage sites in spider precursors indicates that this tool will be less efficient at analyzing transcriptomes in animals other than spiders. The algorithm can be used on-line on the ArachnoServer website.Cone snail toxins are classified (i) in terms of gene superfamilies; (ii) according to the pattern of their cysteine residues in the primary sequence, which partly reflects the 3 […]

library_books

Transcriptome Analysis of Scorpion Species Belonging to the Vaejovis Genus

2015
PLoS One
PMCID: 4319844
PMID: 25659089
DOI: 10.1371/journal.pone.0117188

[…] program (http://www.cbs.dtu.dk/services/SignalP/). The possible propetide regions were predicted by using the Prop 1.0 server (http://www.cbs.dtu.dk/services/ProP/) and the SpiderP server (http://www.arachnoserver.org/spiderP). Multiple sequence alignments were performed with ClustalW2 (http://www.ebi.ac.uk/Tools/msa/clustalw2/), ClustalX 2.0 and T-Coffee (http://www.ebi.ac.uk/Tools/msa/tcoffee/). […]

Citations

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ArachnoServer institution(s)
Institute for Molecular Bioscience, The University of Queensland, St Lucia, QLD, Australia; Queensland Facility for Advanced Bioinformatics, The University of Queensland, St Lucia, QLD, Australia; Bioinformatics Resource Australia EMBL (EMBL-ABR), The University of Queensland, St Lucia, QLD, Australia
ArachnoServer funding source(s)
Supported by the Bioinformatics Resource Australia (EMBL-ABR) through funding to the Queensland Facility for Advanced Bioinformatics (QFAB).

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