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ARALIP specifications

Information


Unique identifier OMICS_03016
Name ARALIP
Restrictions to use None
Maintained Yes

Publication for ARALIP

library_books

Acyl-Lipid Metabolism

2013
PMCID: 3563272
PMID: 23505340
DOI: 10.1199/tab.0161

ARALIP citations

 (6)
library_books

Synteny analysis of genes and distribution of loci controlling oil content and fatty acid profile based on QTL alignment map in Brassica napus

2017
BMC Genomics
PMCID: 5639739
PMID: 29025408
DOI: 10.1186/s12864-017-4176-6

[…] e genes related to these biosyntheses for an afterward detection of potential candidate genes for oil improvement. Thus, A. thaliana genes related to these biosyntheses were acquired from the website ARALIP (http://aralip.plantbiology.msu.edu/) and TAIR (www.arabidopsis.org) []. Brassica genes were identified based on homology to A. thaliana genes, with a score > 80, by using blastn (using A. thal […]

library_books

From chromatogram to analyte to metabolite. How to pick horses for courses from the massive web resources for mass spectral plant metabolomics

2017
GigaScience
PMCID: 5499862
PMID: 28520864
DOI: 10.1093/gigascience/gix037

[…] y; ALEX: Analysis of Lipid Experiments; AMDIS: Automated Mass Spectral Deconvolution And Identification System; ANOVA: analysis of variance; apLCMS: Adaptive Processing of High-Resolution LC-MS data; ARALIP: Arabidopsis acyl-lipid metabolism; ASCII: American Standard Code for Information Interchange; BKM-react: BRENDA-KEGG-MetaCyc reactions; BNICE: Biochemical Network Integrated Computational Expl […]

library_books

Comparative Transcriptomic Analysis of Two Brassica napus Near Isogenic Lines Reveals a Network of Genes That Influences Seed Oil Accumulation

2016
Front Plant Sci
PMCID: 5040705
PMID: 27746810
DOI: 10.3389/fpls.2016.01498

[…] to identify genes related to acyl-lipid metabolism, B. napus gene sequences were analyzed against a list of acyl-lipid metabolism genes obtained from the “Arabidopsis Acyl-Lipid Metabolism” website (ARALIP). Locally installed MultiLoc2 tool was used for prediction of sub-cellular localization of proteins ().To analyze the temporal expression of acyl-lipid metabolism genes in sequential stages of […]

library_books

Transcriptome analysis of Brassica napus pod using RNA Seq and identification of lipid related candidate genes

2015
BMC Genomics
PMCID: 4619414
PMID: 26499887
DOI: 10.1186/s12864-015-2062-7

[…] Brassica napus database (www.genoscope.cns.fr/brassicanapus). In order to distinguish genes homologous to the genes involved in lipid metabolism collected in ARABIDOPSIS ACYL-LIPID METABOLISM (http://aralip.plantbiology.msu.edu/pathways/pathways), sequence alignment was performed between genes in the QTL regions and the lipid-related genes were identified by blastn with evalue less than 10−5. […]

library_books

An annotated database of Arabidopsis mutants of acyl lipid metabolism

2014
PMCID: 4371839
PMID: 25487439
DOI: 10.1007/s00299-014-1710-8

[…] tral database that includes almost all acyl lipid-associated mutants and related information, we consolidated several sources. We started with data from the Arabidopsis Acyl-Lipid Metabolism website (ARALIP: http://aralip.plantbiology.msu.edu), an annotated database of lipid-related genes known or suspected to participate in Arabidopsis acyl lipid metabolism. Specific annotations in this database […]

library_books

Comparative deep transcriptional profiling of four developing oilseeds

2011
Plant J
PMCID: 3507003
PMID: 21851431
DOI: 10.1111/j.1365-313X.2011.04751.x

[…] nts, the Arabidopsis proteome is the most completely annotated and experimentally verified, and includes a recent update of information on several hundred genes involved in lipid metabolism (; http://aralip.plantbiology.msu.edu/). Orthologs of ∼13 000–17 000 Arabidopsis proteins were represented in the four oilseeds (). The EST counts assigned to each gene were expressed as ESTs/100 000 ESTs and t […]

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