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ARAMEMNON specifications

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Unique identifier OMICS_03262
Name ARAMEMNON
Restrictions to use None
Maintained Yes

Publication for ARAMEMNON

ARAMEMNON citations

 (42)
library_books

Coding Sequence Identification and Transcriptional Profiling of Nine AMTs and Four NRTs From Tobacco Revealed Their Differential Regulation by Developmental Stages, Nitrogen Nutrition, and Photoperiod

2018
Front Plant Sci
PMCID: 5850829
PMID: 29563921
DOI: 10.3389/fpls.2018.00210

[…] Homologous sequences of NRTs and AMTs from different plant species were obtained from database (Aramemnon, NCBI) and certain publications (Orsel et al., ; Koegel et al., ). ClustalW method in DNASTAR Lasergene 8 was used to perform a multiple protein-sequence alignment, with parameters: gap open […]

library_books

Peroxiredoxins and Redox Signaling in Plants

2018
PMCID: 5806080
PMID: 28594234
DOI: 10.1089/ars.2017.7164

[…] membrane association as proposed for the human Prdx2 membrane interaction model (). Protons or Ca2+ ions may neutralize the negatively charged hydrophobic faces to imbed 2-CysPrx in the membrane.The Aramemnon online tool (http://aramemnon.uni-koeln.de/request.ep) was then used to explore the lipid-binding characteristics of 2-CysPrx (). A lipid anchor modification was not predicted, but a weak tr […]

call_split

Genome wide analysis of wheat calcium ATPases and potential role of selected ACAs and ECAs in calcium stress

2017
BMC Plant Biol
PMCID: 5658947
PMID: 29078753
DOI: 10.1186/s12870-017-1112-5
call_split See protocol

[…] ECAs sequences were retrieved from Michigan State University Rice Genome Annotation Project (MSU) [] and were cross verified with rice calcium ATPase sequences given in membrane transporter database ARAMEMNON [] and Rice Annotation Project (RAP) []. Oryza sativa calcium ATPases sequences were used to do BLAST searches in UniProtKB [] and Ensembl Plants [] databases to retrieve calcium ATPase sequ […]

library_books

SlBIR3 Negatively Regulates PAMP Responses and Cell Death in Tomato

2017
Int J Mol Sci
PMCID: 5618615
PMID: 28902164
DOI: 10.3390/ijms18091966

[…] n sequences were aligned using the softwares ClustalX 2.0 and Bioedit 7.0.9.0. The protein sequences used for the phylogenetic analysis were used to search the plant membrane protein database (http://aramemnon.uni-koeln.de/) and aligned using ClustalW2.0 (http://www.ebi.ac.uk/Tools/msa/clustalw2/). The phylogenetic tree was generated by PhyML, then viewed and edited using TreeDyn (http://www.phylo […]

library_books

Plant pectin acetylesterase structure and function: new insights from bioinformatic analysis

2017
BMC Genomics
PMCID: 5465549
PMID: 28595570
DOI: 10.1186/s12864-017-3833-0

[…] The presence of a signal peptide was predicted using TargetP []. ARAMEMNON consensus prediction was used to confirm the prediction of signal peptides []. The isoelectric point and molecular weight were predicted using the Compute pI/Mw computational tool []. The gl […]

library_books

Identification of a rice metal tolerance protein OsMTP11 as a manganese transporter

2017
PLoS One
PMCID: 5386239
PMID: 28394944
DOI: 10.1371/journal.pone.0174987

[…] score value for a chloroplast transit peptide (0.211, cTP), mitochondrial targeting peptide (0.053, mTP) and secretory pathway signal peptide (0.157, SP), with uncertain localization scores (0.715). ARAMEMNON (http://aramemnon.botanik.uni-koeln.de/) predicted OsMTP11 distributed primarily in secretory pathways with a high absolute value (3.7). Cumulatively, the above program predictions indicated […]


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ARAMEMNON institution(s)
Universität zu Köln, Botanisches Institut, Köln, Germany

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