ArboDraw specifications

Information


Unique identifier OMICS_26491
Name ArboDraw
Software type Application/Script
Interface Graphical user interface
Restrictions to use None
Input data Some dendrogram files or a set of sequences.
Input format NEWICK,FASTA
Operating system Windows
Programming languages C#
Computer skills Medium
Stability Stable
Requirements
.Net
Maintained Yes

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ArboDraw citations

 (2)
library_books

Structural distinctions in BMPs underlie divergent signaling in spinal neurons

2012
PMCID: 3403000
PMID: 22559862
DOI: 10.1186/1749-8104-7-16

[…] tware (Invitrogen). Sequences are aligned beginning two amino acids upstream from the first conserved cysteine of the mature region [,]). The BMP/TGFβ phylogenetic tree dendrogram was generated using ArboDraw v1.3 software (http://dunbrack.fcccc.edu/ArboDraw). All sequences are from mouse, except for chick dorsalin-1. […]

library_books

Four plant defensins from an indigenous South African Brassicaceae species display divergent activities against two test pathogens despite high sequence similarity in the encoding genes

2011
BMC Res Notes
PMCID: 3213222
PMID: 22032337
DOI: 10.1186/1756-0500-4-459

[…] lant genera. All sequences were obtained from the NCBI and alignment with the newly isolated defensins was performed in ClustalX []. A graphical representation of the phylogenetic tree was created in Arbodraw [].Homology models for each Hc-AFP peptide was created with the Bioinformatics toolkit at the Max Planck Institute for developmental biology http://toolkit.tuebingen.mpg.de/. The crystal stru […]

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