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Arcadia specifications

Information


Unique identifier OMICS_14536
Name Arcadia
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data Descriptions of metabolic pathways
Input format SBML
Output data Diagrams files
Output format PDF, PS, SVG
Operating system Mac OS, Windows
Programming languages C++
License GNU General Public License version 3.0
Computer skills Advanced
Version 1.0
Stability Stable
Maintained Yes

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Documentation


Maintainer


  • person_outline Alice Villeger <>

Publication for Arcadia

Arcadia in publication

PMCID: 3765910
PMID: 23953132
DOI: 10.1186/1471-2105-14-250

[…] orthogonal edge routing techniques []., some of the closest work to ours is research on converting from sbml [] or biopax [] formats into graphical formats like sbgn. some examples for sbml are arcadia [], which uses graphviz [] for layout and the sbml layout extension []. biopax to sbgn conversion is done, for example, by paxtools [] and biouml []. however, these approaches can’t translate […]


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Arcadia institution(s)
School of Chemistry and Manchester Interdisciplinary Biocentre, University of Manchester, Manchester, UK; School of Computer Science, University of Manchester, Manchester, UK
Arcadia funding source(s)
The Biotechnology and Biological Sciences Research Council supported this work [BBE0160651].

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