arcasHLA specifications


Unique identifier OMICS_33219
Name arcasHLA
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input data Some pre-aligned BAM files.
Output data Some three-field resolution for all HLA genes.
Biological technology Illumina
Operating system Unix/Linux
Programming languages Python, Shell (Bash)
License GNU General Public License version 3.0
Computer skills Advanced
Stability Stable
Maintained Yes




No version available


  • person_outline Itsik Pe'er
  • person_outline Raul Rabadan

Publication for arcasHLA

arcasHLA institution(s)
Department of Systems Biology, Columbia University, New York, NY, USA; Department of Computer Science, Columbia University, New York, NY, USA; Department of Environmental Health Sciences, Mailman School of Public Health, Columbia University, New York, NY, USA
arcasHLA funding source(s)
Supported by DARPA grant W911NF-16-2-0035 and grant R01-GM117591.

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