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ArchAlign specifications


Unique identifier OMICS_08560
Name ArchAlign
Software type Package/Module
Interface Command line interface
Restrictions to use Academic or non-commercial use
Operating system Unix/Linux
Computer skills Advanced
Version 1.5
Stability Stable
Maintained Yes


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  • person_outline Michael J. Buck <>

Publication for ArchAlign

ArchAlign in publication

PMCID: 3424540
PMID: 22573177
DOI: 10.1093/nar/gks351

[…] imported into java treeview () in order to generate the heat maps and scales., alignment of mnase protection of origin centers was performed using the chromatin architecture alignment algorithm, archalign (). alignment was performed on log2-ratio, 120-bp-extrapolated data from the lfn sample on 2001-bp windows at 10-bp resolution with a shifting window size of 1500 bp and reversals enabled., […]

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ArchAlign institution(s)
Department of Biochemistry and the Center of Excellence in Bioinformatics and Life Sciences, State University of New York at Buffalo, Buffalo, NY, USA
ArchAlign funding source(s)
This work was supported by an NSF grant to MJB (IIS1016929).

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