ArchCandy specifications

Information


Unique identifier OMICS_22087
Name ArchCandy
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Version 1.0
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Andrey V. Kajava <>

Publication for ArchCandy

ArchCandy in publications

 (4)
PMCID: 5832320
PMID: 29494682
DOI: 10.1371/journal.pone.0193726

[…] ()., sch9 is enriched with asparagine residues. this feature is typical for yeast aggregation-prone proteins. to determine specific region(s) that might be responsible for aggregation, we chose archcandy [] among several available software tools for amyloidogenicity prediction []. among a variety of different analogs we chose this due to accumulating evidence of its accuracy [, , ]. […]

PMCID: 5790219
PMID: 29381728
DOI: 10.1371/journal.pone.0191317

[…] surface of e. coli cells in vivo., the aminoacid sequence of yghj is highly enriched with potentially amyloidogenic regions predicted by three different bioinformatic algorithms, waltz, sarp, and archcandy (). these algorithms are completely different; waltz predicts short, potentially amyloidogenic regions based on a position-specific scoring matrix [], sarp predicts compositionally biased […]

PMCID: 4964860
PMID: 26555096
DOI: 10.1080/19336896.2015.1111506

[…] adopt a stable serpentine structure. for both of these reasons, the regular periodicity of repeat segments may facilitate formation of the serpentine structure. figure 2. , one prediction algorithm, archcandy, has been developed to predict the steric zipper packing interactions within serpentine structures. in preliminary analysis with archcandy, we were not able to identify any obvious trends […]

PMCID: 4262963
PMID: 25500536
DOI: 10.1038/srep07436

[…] dielectric constant were used. images of molecular structures on and were generated with pymol program. alternative structural arrangements of the rhim-containing fibrils () were proposed by the archcandy program. to build the molecular models we used templates of the β-arc conformations found in the known structures of β-solenoids., k.h. initiated the study; k.h., a.v.k. and k.k. performed […]


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ArchCandy institution(s)
Centre de Recherches de Biochimie Macromoleculaire, UMR5237, CNRS, Université Montpellier 1, Montpellier, France; Department of Biosciences, COMSATS Institute of Information Technology, Islamabad, Pakistan; Institut de Biologie Computationnelle, Montpellier, France; UFR des Sciences Pharmaceutiques et Biologiques, Université Montpellier 1, Montpellier, France
ArchCandy funding source(s)
Supported in part by the Overseas Scholarship Scheme Phase II grant by the Higher Education Commission of Pakistan.

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